Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag1213 | ATGGAGGCCGTTCTCTTTGCCCCCACTCCTTCACCTTCTCTCTCCTCAAAACGATTCGTTTCGAATCTTCCTTCCTCCTTCGTCGGCCCTCAGATCTCCACCACTACCTTAAACAAAGCCAAGCCTTTCATAGCCGCCACGCTTTCGAAACCGAAGGGGGAGATTTCCGCCAAGGCTGCATCGCTCAGCTCCGTCGCTACTCGCCAGGATCCATTGCCATTATCTCCTCCTCCTCCGCAGAAGAAGGTCTCGCCGAGTTCTCTACAGTATCCCGCCGGTTACCTCGGCGCTGTACCGGACCGAACGGTTAACGACGAAGGTGGCGATGTTTACATTGGTCCCATGGAATATCTTACTAGCATTTGCTCTGCCAAGGTCTACGACGTCGCCATTGAAACTCCGCTACAGCTCGCAACGAAGCTCTCTGAGCGTTGGGGGGTGAATGTTTGGCTCAAGAGGGAGGATTTACAGCCTGTGTTTTCTTTCAAGCTCCGTGGAGCTTATAATATGATGGCAAAAATTCCTAAGGAACAGTTGGAAAGGGGGGTTATCTGCTCGTCAGCTGGAAATCATGCTCAAGGAGTTGCATTAGCTGCAAAGAGACTTGGTTGCAGTGCAGTGATTGCTATGCCTGTTACTACACCAGAAATCAAGTGGAAGTCTGTAGAGAAATTGGGTGCAATTGTTGTTTTAATAGGAGATTCGTATGATGAGGCACAAGCATATGCAAAAAATCGAGGCATAGAGGAGGGTAGGACATTCATACCTCCATTTGATCACCCAGATGTGATAATGGGCCAAGGAACGGTTGGGGTGGAGATCATGCGTGAAACGAAAGGCCCACTTCATGCAATTTTTGTTCCTGTGGGGGGTGGTGGGCTTATTGCTGGTATTGCTGCTTATGTAAAGACAGTATTTCCCGAGGTCAAGATTATTGGGGTAGAGCCGTCTGATGCAAATGCAATGGCATTGTCATTACATCATGGTCAGAGAGTAATGTTGGACCAGGTTGGAGGTTTTGCGGATGGTGTGGCAGTCAAAGAGGTTGGAGTAGAAACTTTCCGCCTATGCAAAGATCTGGTGGATGGTGTGGTTCTTGTAAGCCGTGACGCTATCTGTGCCTCAATAAAGGACATGTTTGAGGAGAAAAGGAGCATCTTAGAACCTGCAGGTGCTCTTTCCCTTGCTGGAGCCGAGGCATACTGCAAATATTATGGGTTGAAAGGAGAAAATGTTGTGGCAATAACTAGTGGTGCAAATATGAACTTTGATAAACTGAGAATAGTAACTGAGCTTGCTAATGTTGGTCGTCAACAAGAAGCCGTGCTTGCAACCACCATGCCAGAGGTGCCCGGAAGTTTCAAAAGATTTTGTGAACTGGTGGGGCCTATGAATATCACTGAATTCAAATATAGATATAATTCTGATAAGGAGGCTGTCGTTCTATACAGTGTTGGCATTCATACGGCTTCCGAACTTGAAGCAATGAAGGAGCGGATGGAATCCTCTAAACTTAAAGTTTATAACCTTACAAAGAGTGACTTGGTGAAAGACCACTTGCGTTATTTGATGGGAAGCAGATCAAACATTCAAAACGAGGTTCTCTGTCGTTTTGTATTTCCGGAGAGGCCAGGTGCTCTAATGAAGTTCTTGGACGCTCTGAGTCCCCGTTGGAACATTAGTTTGTTCCATTACCGTGGACAGGGTGAAACTGGTGCAAACGTATTAGTTGGGGTCCAGGTTGATAGAAGGGACATGGATGAGTTCCACAGCCGTGCAAGCAGGCTTGGATATGATTATGTAGTGGTAACCGATGATGAGGATTTCCAGCTTTTGATGCATTGA | 1845 | 46.94 | MEAVLFAPTPSPSLSSKRFVSNLPSSFVGPQISTTTLNKAKPFIAATLSKPKGEISAKAASLSSVATRQDPLPLSPPPPQKKVSPSSLQYPAGYLGAVPDRTVNDEGGDVYIGPMEYLTSICSAKVYDVAIETPLQLATKLSERWGVNVWLKREDLQPVFSFKLRGAYNMMAKIPKEQLERGVICSSAGNHAQGVALAAKRLGCSAVIAMPVTTPEIKWKSVEKLGAIVVLIGDSYDEAQAYAKNRGIEEGRTFIPPFDHPDVIMGQGTVGVEIMRETKGPLHAIFVPVGGGGLIAGIAAYVKTVFPEVKIIGVEPSDANAMALSLHHGQRVMLDQVGGFADGVAVKEVGVETFRLCKDLVDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVAITSGANMNFDKLRIVTELANVGRQQEAVLATTMPEVPGSFKRFCELVGPMNITEFKYRYNSDKEAVVLYSVGIHTASELEAMKERMESSKLKVYNLTKSDLVKDHLRYLMGSRSNIQNEVLCRFVFPERPGALMKFLDALSPRWNISLFHYRGQGETGANVLVGVQVDRRDMDEFHSRASRLGYDYVVVTDDEDFQLLMH | 614 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 8451451 | 8454742 | - | Conep19aG0124800.1 | Cone19ag1213 | 459650 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag1213 | 614 | NCBIfam | threonine ammonia-lyase, biosynthetic | 116 | 612 | IPR005787 | GO:0004794(InterPro)|GO:0009097(InterPro) | |
| Cone19ag1213 | 614 | SUPERFAMILY | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 114 | 468 | IPR036052 | - | |
| Cone19ag1213 | 614 | ProSiteProfiles | ACT-like domain profile. | 534 | 605 | IPR001721 | - | |
| Cone19ag1213 | 614 | Gene3D | Biosynthetic Threonine Deaminase; Domain 3 | 440 | 614 | IPR038110 | - | |
| Cone19ag1213 | 614 | CDD | ACT_ThrD-I_2 | 533 | 613 | - | - | |
| Cone19ag1213 | 614 | ProSiteProfiles | ACT-like domain profile. | 441 | 512 | IPR001721 | - | |
| Cone19ag1213 | 614 | ProSitePatterns | Serine/threonine dehydratases pyridoxal-phosphate attachment site. | 154 | 167 | IPR000634 | GO:0006520(InterPro)|GO:0030170(InterPro) | |
| Cone19ag1213 | 614 | CDD | Thr-dehyd | 118 | 422 | - | - | |
| Cone19ag1213 | 614 | Pfam | C-terminal regulatory domain of Threonine dehydratase | 431 | 520 | IPR001721 | - | |
| Cone19ag1213 | 614 | Pfam | C-terminal regulatory domain of Threonine dehydratase | 525 | 611 | IPR001721 | - | |
| Cone19ag1213 | 614 | FunFam | Threonine dehydratase | 440 | 614 | - | - | |
| Cone19ag1213 | 614 | Pfam | Pyridoxal-phosphate dependent enzyme | 131 | 418 | IPR001926 | - | |
| Cone19ag1213 | 614 | Gene3D | - | 133 | 412 | IPR036052 | - | |
| Cone19ag1213 | 614 | FunFam | L-threonine dehydratase | 234 | 412 | - | - | |
| Cone19ag1213 | 614 | CDD | ACT_ThrD-I_1 | 440 | 523 | - | - | |
| Cone19ag1213 | 614 | SUPERFAMILY | ACT-like | 521 | 612 | IPR045865 | - | |
| Cone19ag1213 | 614 | PANTHER | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED | 119 | 604 | IPR050147 | GO:0003941(PANTHER)|GO:0004794(PANTHER)|GO:0006565(PANTHER)|GO:0006567(PANTHER)|GO:0009097(PANTHER) | |
| Cone19ag1213 | 614 | MobiDBLite | consensus disorder prediction | 66 | 86 | - | - | |
| Cone19ag1213 | 614 | Gene3D | - | 166 | 257 | IPR036052 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag1227 | Cone-Chr13:9425744 | Cone19ag1213 | Cone-Chr19:8451451 | 1.34E-203 | wgd | |
| Cone19ag1213 | Cone-Chr19:8451451 | Cone3ag0217 | Cone-Chr3:1153272 | 4.33e-315 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag1213 | K01754 | - | mdm:103449936 | 934.095 |