Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1215 ATGGCGGTTGTTCCGACTGTCCCCGCCGCTCCGGCTTCTCTCTACGTCGGCGACCTCCACCCTGAGGTCACTGACTCTCAGCTCTTTGATGCTTTCTCTGAATTCAAGAGCCTCGCGTCAGTTCGAATCTGTCGAGACTCCTCTACCGGTCGCTCTCTCTGCTACGGCTATGTTAATTACATATCTCTTCAGGAAGCAACTAAAGCTATTGAGGCAAAGAACAACAGTATGCTGCATGGAAAAGTGATAAGGGTCATGTGGTCACATCGTGATCCTGATGGGAGGAGAAGTGGAATTGGGAATGTGTTTGTCAAGAATTTGAGTGATTTGATTGATAATGCGGGGCTTCATGACATGTTTGCGAAGTTTGGTAGTATTTTCTCCTCCAAGGTTGCCATGTCAGAGGATGGAATGAGTAAATGTTACGGGTTTATTCAGTTCGAGACTGAGGAATCTGCAAATGATGCCATCGAGAAGCTAAATGGCTCCACTGTTGGGGATAGGCCGATATATGTCGGTAAATTTGTTAGAAGGAATGACCGAGTTTTGGCCAGTCCTGATGCTAAGTACACAAATTTGTATGTCAAAAATCTGGATCCAGAAGTCGGGGAAGAGCTTCTGCGGGAAAAATTTTATCGGTTTGGCAAAATTGCCAGTCTTGTTATTGTACAGGGTATGAATGGGATGTCAAAAGGTTTTGGATTTATAAACTTTGAAAACTCCGATGATGCCTGGCGAGCAATGGAAGAAATGAATGGAGCACAACTGGGCTCAGAGGTTCTGTATGTGGCAAGGGCACAGAAGAAGTCAGAACGTGAGCAAGTATTGCGTCTTCAGTTTGAAGAGAAACGCAAGGAGCAGATAATGAAATTTAAGGGCTTGAATGTGTATGTGAAGAACATTGGCGACTACGTCACTGATGAAGAATTCCGAGAACTTTTCAGTCAGTGTGGTGCAGTAACCTCTGCAAAACTGATGCGGGATGACAAAGGAATTAGCAAAGGGTTTGGATTTGTTTGCTTTTCAACTCTTGAGGAGGCCAACAAAGCAGTGAACACTTTTCATGGATATATGTTCCATGGGAAGCCATTATACGCGGCTATTGCCCAAAGGAAAGAAGACAGACAAGTACAATTGCAGATTCAGCATGCACAGCTTATGGCAGGTCTAGCTGCATCTCCACCAACACTTATCCCTGGTGCATATCCTCCTTATTACTATGCAGCTCCCGCCGGTGTGGGCCCACAGGTGCCACCTCGTCCTGGTCTGATGTATCAGCCTTTAGGATTGATGCCAGGTCCACCTGGATGGAGGGCTAATAGCTTTGCACCTCTAACTAGACCAGGCTTTCAACAATCGCCAGTTCCTGTTGTTCCTAATACAGCAAGACATCCTAGGCAAAACAGGGTCAGAATGAATGGGCAAATGCTTTCTCAAAAGACTGATCAAGCTGTTCTATATATGCAGAATTCTCAGCAGACCTCTCAGTCAACGAATTCTTCTAAAGAATCATCCAATCAACAGCAGGCTAAGTATGTGCCAAACGGACGTCCAGGCAATATGAACAAAAGTTCTGGAATCTCATCTTCCTCTTCCAACTCTGTCGGGATAGCATCAGATGGATCGGACGGTCCAGAGATGCTGAGTAGTATGCTCGCTGCCGCTTCACCCAATCATCAGAAACAGATACTTGGGGAACGGCTCTACCCCCTTGTTCAGAAACACAGGGTAAATGCTACATGTTCTGCCGGAGCTTACGGCAAAAATTACGGGTATGCTTTTGGAAATGGATAA 1794 45.65 MAVVPTVPAAPASLYVGDLHPEVTDSQLFDAFSEFKSLASVRICRDSSTGRSLCYGYVNYISLQEATKAIEAKNNSMLHGKVIRVMWSHRDPDGRRSGIGNVFVKNLSDLIDNAGLHDMFAKFGSIFSSKVAMSEDGMSKCYGFIQFETEESANDAIEKLNGSTVGDRPIYVGKFVRRNDRVLASPDAKYTNLYVKNLDPEVGEELLREKFYRFGKIASLVIVQGMNGMSKGFGFINFENSDDAWRAMEEMNGAQLGSEVLYVARAQKKSEREQVLRLQFEEKRKEQIMKFKGLNVYVKNIGDYVTDEEFRELFSQCGAVTSAKLMRDDKGISKGFGFVCFSTLEEANKAVNTFHGYMFHGKPLYAAIAQRKEDRQVQLQIQHAQLMAGLAASPPTLIPGAYPPYYYAAPAGVGPQVPPRPGLMYQPLGLMPGPPGWRANSFAPLTRPGFQQSPVPVVPNTARHPRQNRVRMNGQMLSQKTDQAVLYMQNSQQTSQSTNSSKESSNQQQAKYVPNGRPGNMNKSSGISSSSSNSVGIASDGSDGPEMLSSMLAAASPNHQKQILGERLYPLVQKHRVNATCSAGAYGKNYGYAFGNG 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8459986 8464478 - Conep19aG0125000.1 Cone19ag1215 459652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1215 597 MobiDBLite consensus disorder prediction 450 474 - -
Cone19ag1215 597 Gene3D - 544 583 - -
Cone19ag1215 597 MobiDBLite consensus disorder prediction 489 544 - -
Cone19ag1215 597 FunFam Polyadenylate-binding protein 182 276 - -
Cone19ag1215 597 PANTHER RNA BINDING PROTEIN 11 190 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone19ag1215 597 MobiDBLite consensus disorder prediction 489 539 - -
Cone19ag1215 597 SUPERFAMILY RNA-binding domain, RBD 292 381 IPR035979 GO:0003676(InterPro)
Cone19ag1215 597 SUPERFAMILY RNA-binding domain, RBD 183 277 IPR035979 GO:0003676(InterPro)
Cone19ag1215 597 FunFam Polyadenylate-binding protein 4 96 - -
Cone19ag1215 597 FunFam Polyadenylate-binding protein 97 181 - -
Cone19ag1215 597 Gene3D - 182 277 IPR012677 -
Cone19ag1215 597 Gene3D - 278 381 IPR012677 -
Cone19ag1215 597 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676(InterPro)
Cone19ag1215 597 FunFam Polyadenylate-binding protein 277 385 - -
Cone19ag1215 597 CDD RRM4_I_PABPs 293 371 - -
Cone19ag1215 597 Gene3D - 6 100 IPR012677 -
Cone19ag1215 597 SMART rrm2_1 192 264 IPR003954 GO:0003676(InterPro)
Cone19ag1215 597 SMART rrm2_1 295 367 IPR003954 GO:0003676(InterPro)
Cone19ag1215 597 SMART rrm2_1 13 86 IPR003954 GO:0003676(InterPro)
Cone19ag1215 597 SMART rrm2_1 101 173 IPR003954 GO:0003676(InterPro)
Cone19ag1215 597 SUPERFAMILY PABC (PABP) domain 548 577 IPR036053 GO:0003723(InterPro)
Cone19ag1215 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 Pfam RNA recognition motif 14 84 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 Pfam RNA recognition motif 193 261 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 Pfam RNA recognition motif 102 170 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 Pfam RNA recognition motif 296 364 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 578 IPR006515 GO:0003723(InterPro)
Cone19ag1215 597 Gene3D - 101 181 IPR012677 -
Cone19ag1215 597 SMART rrm1_1 13 86 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 SMART rrm1_1 101 173 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 SMART rrm1_1 192 264 IPR000504 GO:0003723(InterPro)
Cone19ag1215 597 SMART rrm1_1 295 367 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1215 Cone-Chr19:8459986 Cone3ag0985 Cone-Chr3:28639047 1.43E-125 dispersed
Cone19ag1215 Cone-Chr19:8459986 Cone8ag1121 Cone-Chr8:9919319 1.05E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1215 K13126 - vvi:100267544 746.888