Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1228 ATGGACAGAGAATGGGGTTCGAAGCCGGGGAGCGGAGGCGCCGCCTCCGCGCAGAACGAAGCAATCGATCGGAGAGAGCGCCTTCGGAGGCTTGCCCTAGAGACGATAGATCTCGCTAAAGATCCCTATTTCATGCGAAATCATCTCGGAAGTTATGAGTGTAAACTTTGCCTGACTCTTCACAACAATGAGGGAAATTACCTGGCGCACACTCAGGGGAAGAGGCATCAGACTAATTTAGCGAAACGAGCCGCTCGTGAAGCCAAGGACGCCCCTGTACAGCCTCAACCTCACAAGCGAAAGGTCTCAGTTCGCAAAGTAGTGAAAATTGGCAGGCCTGGTTACCGTGTAACAAAGCAATTTGATCCAGACACAAAGCAGAGGTCTCTGCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTTTTGAAGCCAAGGCATCGGTTTATGTCTTCCTATGAACAGAGAGTGCAACCTTTTGATAAAAGATACCAATATCTTCTGTTTGCAGCCGAACCGTATGAGATCATTGCGTTCAAGGTTCCTAGCACGGAGATAGACAAATCTACTCCTAAGTTCTTCTCTCATTGGGATTCAGACTCGAAGATGTTCACGCTTCAGTTATATTTCAAGACGAAACCAGCAGAGCCAAACAAACCACCAACTGGCCAGGAAGCCAATGGGCCAGGGGCTCCTGGTGCACCGCCACAAGCTCCACCCCCACCACCTCCACAGCAAGGCATGCTGCCCGGTGGACCTCCTAGAGCTCCTCCACCTCCAATGCCGGGATCATTACCTCCTCCCCCACCTCCTATGGCTAATGAGCCTAGGCCTATGCCCCCTGGCGGACCTCCACCAGTTCCTCCCCCACCTCCCATTGGTAATAGCTCGATGGTAAACTTCACTACTCAAATGGGTAGACTGCCTTCAATGCCACCACCTCCTCAAGGTTTTCAGGGTATGCGCCCACCTCCCCCACCTCCTTATATGGGACAAAATCCAAGGCCTTCAAATCAATAG 1020 51.08 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPVQPQPHKRKVSVRKVVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLLKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKTKPAEPNKPPTGQEANGPGAPGAPPQAPPPPPPQQGMLPGGPPRAPPPPMPGSLPPPPPPMANEPRPMPPGGPPPVPPPPPIGNSSMVNFTTQMGRLPSMPPPPQGFQGMRPPPPPPYMGQNPRPSNQ 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8500525 8502829 - Conep19aG0126300.1 Cone19ag1228 459665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1228 339 MobiDBLite consensus disorder prediction 1 21 - -
Cone19ag1228 339 MobiDBLite consensus disorder prediction 232 295 - -
Cone19ag1228 339 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 337 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Cone19ag1228 339 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone19ag1228 339 Gene3D Classic Zinc Finger 46 89 - -
Cone19ag1228 339 SMART CactinC_cactus_3 89 219 - -
Cone19ag1228 339 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Cone19ag1228 339 FunFam Splicing factor 3a subunit 2 94 218 - -
Cone19ag1228 339 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Cone19ag1228 339 Pfam Zinc-finger of C2H2 type 52 76 IPR013087 -
Cone19ag1228 339 Gene3D - 93 218 - -
Cone19ag1228 339 MobiDBLite consensus disorder prediction 308 333 - -
Cone19ag1228 339 MobiDBLite consensus disorder prediction 213 339 - -
Cone19ag1228 339 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1242 Cone-Chr13:9483765 Cone19ag1228 Cone-Chr19:8500525 4.15E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1228 K12826 - cit:102607630 417.927