Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag1238 | ATGTCACGAGAATCTGAGGATATAAACACGATTGAGTACTGGAAATGGTCTGAAATGCAAGGCCTCGAACTCGTTTCTCCTGCTGCTCCAGAAAATTCCAAACTTGAACAAGAAGGTGAACAGAGTGAAAACAGAGTACTAGGAAGTAGAGAATTGGAAAACCCAGAGCTTAAGAATGACAACAATGGCGGCCGTGGAGACAAGCCTGAGAAGCTTGAAACCATTCCCCCAGTTGGATTCGGACAGCTTTTCAGATTCGCTGATGGGTTGGATTACGTTCTAATGTCGATTGGAACAATCGGAGCAATAGTCCATGGTTGCTCTCTTCCCCTATTTCTTCGCTTCTTCGCCGATCTTGTTAATTCATTCGGGTCCAATACTAACAATATGGATAAGATGATGCAGGAAGTACTAAAATATGCGTTTTACTTTCTTGTTGTTGGAGCTGCTATATGGGCATCTTCATGGGCTGAAATATCGTGTTGGATGTGGACTGGAGAGAGGCAATCAACGAAGATGAGGATAAAGTATCTTGAAGCAGCTCTGAATCAAGATATACAATACTTTGACACAGAGGTCAGAACATCCGACGTCGTTTGTGCTATCAACACAGATACAGTGATGGTACAAGACGCTATTAGTGAGAAGTTGGGTAATTTCATACACTACATGGGAACATTTGTGTCTGGATTTGTTGTGGGATTCACTGCTGTTTGGCAACTGGCTTTAGTCACTCTCGCCGTGGTTCCTCTAATTGCTGTAATTGGAGGAATTCACACCGCCACATTAGCTAAACTCTCTGGAAAAAGCCAAGAATCTCTTTCTCAAGCTGGAAACATTATAGAACAGACGATAGCACAAATCCGAGTTGTATTCTCTTACGTTGGAGAATCAAAAGCATTACAAGGCTACTCAGCGGCTTTGAAAGTTGCTCAAAAGATAGGTTATAGAACTGGTTTTGCAAAGGGAATGGGACTTGGAGCAACTTACTTTGTCGTTTTCTGCTGTTATGCTCTTCTTCTATGGTATGGTGGCTATTTAGTTAGACACCATTACACCAATGGAGGACTCGCCATAGCCACCATGTTTGCAGTTATGATTGGTGGATTGGCTTTGGGACAATCTGCCCCTAGCCTAGCTGCATTTGCAAAAGCCAAAGTAGCAGCTGCAAAGATTTTCCGCATAATTAATCATAAGCCATCTGTGGACCGGAACAACGAATCCGGTTTGGAACTGGAATCAGTTATGGGTCTAGTTGAATTGAAAAGCCTAGACTTTTCATATCCATCTAGGCCGGACATACGCATCCTTAACAATTTCTCGCTCAGTGTGCCGGCCGGAAAGACTATAGCTTTGGTCGGTAGTAGTGGGTCCGGTAAGAGCACCGTTGTCTCCCTCATCGAGAGATTTTATGACCCCAACTCAGGAGAAGTTTTGCTTGATGGGCATGATATAAAGACGTTGAAGCTGAGATGGTTGAGGCAGCAAATAGGGCTAGTGAGCCAAGAACCGGCTTTATTTGCTACCACCATTAAAGAGAACATACTCTTGGGTAGACCGGATGCTGACCAAGTCGAGGTCGAGGAGGCTGCCCGAGTAGCTAACTCCCATTCGTTCATTATCAAACTTCCGGATGGATACGATACTCAGGTCGGGGAAAGGGGGTTGCAGCTATCAGGAGGGCAGAAACAGAGGATAGCTATAGCAAGGGCAATGCTGAAAAATCCGGCAATCCTTCTCTTAGACGAGGCAACTAGTGCATTAGACTCCGAGTCAGAAAAGCTTGTCCAAGAGGCTCTTGACCGGTTCATGATCGGAAGGACAACTCTTGTCATTGCTCATCGCCTCTCGACCATCCGGAAAGCTGACCTTGTGGCCGTAATCCAGCAGGGTAGCGTTTCCGAAATTGGGACCCACGATGAGCTCTTCTCCAAAGGAGAAAATGGTGTCTATGCTAAGCTCATCCGAATGCAAGAGGCTGCCCATGAAACTGCTCTCAACAATGCCCGAAAAAGTAGTGCAAGGCCTTCAAGTGCGAGGAACTCAGTAAGCTCGCCAATAATCACACGGAATTCTTCATATGGTCGGTCACCATACTCACGCCGTTTATCTGACTTTTCCACTTCCGATTTTAGCCTTTCTATTGATGCTTCACATCCTAATTACCGCCTAGAAAAGCTTCCCTTCAAGGAGCAAGCTGGTTCCTTCTGGCGCTTAGCAAAAATGAATTCTCCCGAATGGGGTTGTGCTCTAGTGGGCTCCATCGGTTCTGTTGTTTGTGGGTCCCTTAGTGCTTTCTTCGCATACGTTCTAAGTGCTGTTATGAGTGTGTATTACAACCCAAACCATGCTTATATGATCCAAGAAATAGGAAAGTACTGCTATTTATTAATCGGGCTTTCTTCGGCTGCTCTTCTGTTCAATACGCTACAGCATTTCTTCTGGGATATTGTTGGTGAAAACCTTACCAAACGTGTAAGAGAGAAAATGCTGGTAGCTGTCCTGAAAAATGAAATGGCGTGGTTTGACCAAGTGGAGAACGAGAGCGCCCGGATTGCTGCCAGGCTGGCACTTGATGCGAACAATGTAAGATCAGCCATTGGAGACCGGATTTCTGTTATTGTTCAGAACACGGCCCTCATGCTTGTTGCTTGCACTGCTGGGTTCGTGTTAGAGTGGCGGCTTGCCCTTGTCCTTGTAGCTGTATTTCCGGTTGTTGTTGCTGCCACTGTTTTGCAGAAAATGTTTATGACCGGTTTTTCGGGGGACCTTGAGGCTTCACATGCCCAGGCAACACAATTAGCTGGGGAGGCCATTGCAAATGTAAGGACCGTTGCTGCCTTCAATTCGGAGGAGAAAATCATCGGCCTCTTCTCGTCAAATCTACAGATTCCGCTAAGGCATTGCTTTTGGAAGGGACAAATAGCTGGTAGTGGATTCGGGGTAGCTCAATTTTGTCTCTATGCCTCGTATGCTCTAGGTCTTTGGTATGCTTCTTGGCTCGTAAAACACGGGATCTCCGATTTCTCAAAGACTATCCGGGTCTTTATGGTACTTATGGTCTCGGCCAATGGTGCAGCTGAAACACTTACCCTAGCTCCGGACTTCATCAAGGGTGGTCGAGCCATGCGGTCTGTGTTTGACCTTCTCGACCGCAAAACCGAGATCGAGCCCGATGACCCAGATGCGACCACGGTTCCAGATCGTCTTCGTGGAGAAGTTGAATTCAAACACATAGACTTTTCTTACCCAACCCGTCCGGATGTTCCCATCTTTCGTGACCTCAATCTACGTGCCCGAGCAGGTAAGACTCTAGCCCTTGTGGGCCCCAGTGGCTGTGGAAAGAGCTCTGTTATTTCGCTCATACAACGATTCTACGAGCCGACATCCGGAAGAGTTATAATCAACGGAAAAGACATCCGCAAATACAACCTAAAGTCCCTTAGAAGACACATTGCTATGGTCCCACAAGAACCGTGCCTTTTTGCTGGAACTATTTACGATAACATTGCATACGGGCATGAATCAGCCACAGAATCCGAGATCATAGAAGCTGCTACTTTAGCCAATGCACATAAATTCATATCGGCATTGCCAGATGGGTACAAAACATCTGTCGGAGAGAGAGGGATTCAATTATCGGGAGGGCAAAAACAAAGAGTTGCAATTGCCCGTGCTTTGATTCGAAAGGCCGAGCTCATGCTTCTAGATGAGGCGACTAGTGCACTTGATGCAGAATCCGAGAGGTCTGTTCAAGAGGCACTGGACCGAGCTTGCTCGGGAAAGACTACTATTGTCATTGCTCATCGTTTATCGACAGTTAGGAATGCTCACACGATTGCTGTGATTGATGATGGGAAAGTGGCCGAGCAAGGATCGCATTCCCATTTGTTGAAAAATTATCCAGATGGGTGTTATGCTCTGATGATTCAATTGCAGAGGTTTACGCATAGTCAAGTAATCGGGATTGCTTCGGGTTCAACTTCTTCGAGTAAACCACGGGACGATGATGAGAAAGAGAGCTAG | 4026 | 46.17 | MSRESEDINTIEYWKWSEMQGLELVSPAAPENSKLEQEGEQSENRVLGSRELENPELKNDNNGGRGDKPEKLETIPPVGFGQLFRFADGLDYVLMSIGTIGAIVHGCSLPLFLRFFADLVNSFGSNTNNMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALNQDIQYFDTEVRTSDVVCAINTDTVMVQDAISEKLGNFIHYMGTFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTATLAKLSGKSQESLSQAGNIIEQTIAQIRVVFSYVGESKALQGYSAALKVAQKIGYRTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSLAAFAKAKVAAAKIFRIINHKPSVDRNNESGLELESVMGLVELKSLDFSYPSRPDIRILNNFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGEVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANSHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVIQQGSVSEIGTHDELFSKGENGVYAKLIRMQEAAHETALNNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSIDASHPNYRLEKLPFKEQAGSFWRLAKMNSPEWGCALVGSIGSVVCGSLSAFFAYVLSAVMSVYYNPNHAYMIQEIGKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLVAVLKNEMAWFDQVENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLEWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEASHAQATQLAGEAIANVRTVAAFNSEEKIIGLFSSNLQIPLRHCFWKGQIAGSGFGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEIEPDDPDATTVPDRLRGEVEFKHIDFSYPTRPDVPIFRDLNLRARAGKTLALVGPSGCGKSSVISLIQRFYEPTSGRVIINGKDIRKYNLKSLRRHIAMVPQEPCLFAGTIYDNIAYGHESATESEIIEAATLANAHKFISALPDGYKTSVGERGIQLSGGQKQRVAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVIAHRLSTVRNAHTIAVIDDGKVAEQGSHSHLLKNYPDGCYALMIQLQRFTHSQVIGIASGSTSSSKPRDDDEKES | 1341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 8534464 | 8540359 | + | Conep19aG0127300.1 | Cone19ag1238 | 459675 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag1238 | 1341 | ProSitePatterns | ABC transporters family signature. | 558 | 572 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | Gene3D | ABC transporter type 1, transmembrane domain | 1040 | 1318 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone19ag1238 | 1341 | Pfam | ABC transporter | 437 | 586 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 411 | 658 | IPR027417 | - | |
| Cone19ag1238 | 1341 | SUPERFAMILY | ABC transporter transmembrane region | 738 | 1058 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone19ag1238 | 1341 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 740 | 1056 | - | - | |
| Cone19ag1238 | 1341 | ProSitePatterns | ABC transporters family signature. | 1213 | 1227 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | FunFam | ABC transporter B family member 19 | 1040 | 1062 | - | - | |
| Cone19ag1238 | 1341 | MobiDBLite | consensus disorder prediction | 27 | 72 | - | - | |
| Cone19ag1238 | 1341 | SMART | AAA_5 | 1101 | 1293 | IPR003593 | GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | SMART | AAA_5 | 446 | 632 | IPR003593 | GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | FunFam | ABC transporter B family member 1 | 730 | 1039 | - | - | |
| Cone19ag1238 | 1341 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 751 | 1038 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone19ag1238 | 1341 | FunFam | ABC transporter B family member 1 | 1064 | 1314 | - | - | |
| Cone19ag1238 | 1341 | CDD | ABC_MTABC3_MDL1_MDL2 | 1074 | 1313 | - | - | |
| Cone19ag1238 | 1341 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1065 | 1313 | IPR027417 | - | |
| Cone19ag1238 | 1341 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 97 | 384 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone19ag1238 | 1341 | PANTHER | ABC TRANSPORTER B FAMILY | 39 | 684 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cone19ag1238 | 1341 | SUPERFAMILY | ABC transporter transmembrane region | 82 | 400 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone19ag1238 | 1341 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1074 | 1310 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | MobiDBLite | consensus disorder prediction | 665 | 697 | - | - | |
| Cone19ag1238 | 1341 | FunFam | ABC transporter B family member 1 | 82 | 416 | - | - | |
| Cone19ag1238 | 1341 | Gene3D | ABC transporter type 1, transmembrane domain | 82 | 672 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone19ag1238 | 1341 | Gene3D | - | 409 | 659 | IPR027417 | - | |
| Cone19ag1238 | 1341 | Gene3D | - | 1063 | 1314 | IPR027417 | - | |
| Cone19ag1238 | 1341 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 95 | 379 | - | - | |
| Cone19ag1238 | 1341 | Pfam | ABC transporter | 1093 | 1241 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | Gene3D | ABC transporter type 1, transmembrane domain | 731 | 1039 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cone19ag1238 | 1341 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 419 | 655 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone19ag1238 | 1341 | MobiDBLite | consensus disorder prediction | 36 | 72 | - | - | |
| Cone19ag1238 | 1341 | FunFam | ABC transporter B family member 1 | 409 | 659 | - | - | |
| Cone19ag1238 | 1341 | Pfam | ABC transporter transmembrane region | 755 | 1021 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone19ag1238 | 1341 | Pfam | ABC transporter transmembrane region | 96 | 368 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cone19ag1238 | 1341 | CDD | ABC_MTABC3_MDL1_MDL2 | 419 | 658 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0856 | Cone-Chr16:9101076 | Cone19ag1238 | Cone-Chr19:8534464 | 0 | dispersed | |
| Cone18ag0467 | Cone-Chr18:2249702 | Cone19ag1238 | Cone-Chr19:8534464 | 0 | dispersed | |
| Cone19ag1238 | Cone-Chr19:8534464 | Cone2ag0187 | Cone-Chr2:985768 | 0 | dispersed | |
| Cone10ag0226 | Cone-Chr10:1108440 | Cone19ag1238 | Cone-Chr19:8534464 | 0 | wgd | |
| Cone13ag1253 | Cone-Chr13:9519558 | Cone19ag1238 | Cone-Chr19:8534464 | 0 | wgd | |
| Cone19ag1238 | Cone-Chr19:8534464 | Cone2ag0099 | Cone-Chr2:451803 | 1.04E-66 | wgd | |
| Cone19ag1238 | Cone-Chr19:8534464 | Cone3ag0257 | Cone-Chr3:1355665 | 8.34E-293 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag1238 | K05658 | - | rcu:8284004 | 2235.3 |