Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1247 ATGGAGACAAACGGTCACTTAGACGGAACGACGTCGTCGTCTTTGTTGAAGAGTTTCTGCGTGAGTGGTAACGATATTCATCATCGCGAGGATCCGCTGAGCTGGGGAGCGGCGGCCGAGTCGATGGCGGGGAGTCATTTTGAGGAGGTGAAGAGGATGGTGACTGAGTACCGTAGGCCGGTGGTGAAACTCGGCGGCAAGACTCTGACCATTGCTCAGGTGGCGGCGATTTCAGCTGGTGTGAAGACGTCCGTGGAGCTGTCCGAGTCGGCTAGGGCTGGAGTTCAGGCGAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGGACGGACAGTTACGGCGTTACCACCGGCTTTGGTGCCACGTCGCATCGGAGAACCAAACAGGGCGGTGCTCTTCAGAAGGAGCTCATCCGATTTCTGAATGCTGGAATATTCGGAACCGGAACGGAATCATGTCACACGCTACCGCAGTCCACCACAAGAGCAGCCATGCTGGTCCGGATCAACACTCTTCTTCAAGGTTATTCCGGCATCAGATTCCAAATCCTAGAAGCCATGACCAAATTTCTCAACCACAACATCACTCCATGTCTACCACTACGTGGCACGATCACGGCTTCTGGCGATCTCGTACCTCTATCTTACATAGCCGGACTACTCACGGGCCGGCCCAACTCCAAAGCCATCGGCCCGAAAGGTGAGACCCTCAATGCCAAAGAAGCATTCAACAAAGCCGGGATCGACACTGGGTTTTTTGAATTACAGCCGAAAGAAGGCCTTGCTCTTGTCAATGGCACTGCAGTTGGTTCGGCATTAGCTTCTATGGTTCTTTACGAGGCGAACATTCTTGCCATTTTGTCGGAATTGTTATCGGCTGTTTTTGCTGAAGTTATGCAGGGTAAACCCGAGTTTACGGATCACTTGACGCATAAATTGAAGCACCATCCAGGCCAGATTGAAGCTGCAGCAATAATGGAGCATATTTTGGATGGAAGTGCTTACGTGAAAGCGGCTAAGAAATTACACGAGACTGATTCTTTGCAAAAGCCAAAACAGGACCGATATGCTCTCCGAACTTCACCGCAGTGGCTCGGTCCTCAAATCGAAGTAATTCGCTTTTCAACCAAATCGATCGAGAGAGAGATTAACTCGGTTAATGATAACCCTCTGATCGATGTTTCTAGAAACAAGGCCTTACATGGCGGAAACTTCCAGGGAACCCCAATTGGAGTTTCCATGGACAATACCCGTTTAGCTATAGCCGCAATTGGAAAACTCATGTTCGCTCAATTTTCCGAGCTTGTTAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCAGGAGGTAGAAACCCAAGTTTGGATTATGGTTTCAAAGGTGCGGAAATAGCCATGGCTTCTTACTGTTCCGAACTTCAGTATCTAGCCAATCCCGTTACGAGCCATGTCCAAAGTGCCGAGCAGCATAATCAAGACGTGAACTCTTTGGGATTAATATCTTCGAGGAAAACAGCTGAAGCTGTTGATATCTTAAAGCTGATGTCATCAACATTTTTACTAGCAATATGCCAAGCTATTGACTTGAGGCATTTGGAGGAGAACCTGAGAAACACTGTTAAGAACACGGTGAGCCAAGTGGCTAAGAGGGTATTAATCACCGGTTCCAACGGCGAGCTTCACCCGTCTAGATTCTGTGAGAAGGATCTGCTCAAAGTGGTCAACAGAGAGTACGTTTTTGCATATATCGATGACCCTTGTTTGGCTACATACCCTTTGATGCAAAAGCTTAGACAAGTGCTAGTGGAACATGCTTTGACAAATGGAGAAGGCGAGAAGAATGCAAGCACATCAATCTTCCAAAAGGTAGGGGTGTTTGAAGAAGAGCTCAAGGCTATTTTGCCTAAGGAAGTGGAGAGTGCCAGGGTGGCGGTTGAGAGCGGTAATGCTGTGATTCCGAATCAGATTAAGGAGTGCCGGTCTTATCCGTTGTACAAGTTTGTTAGAGAGGAGTTGGGTACGAGGTTGCTTACGGGCGAGAAGGCTGTATCGCCCGGTGAAGAGTGTGATAAGGTGTTTGTTGCTTTGTGTGAGGGGAAGCTCATCGATCCCATTCTTGATTGCTTGAAGGAGTGGAATGGTGCACCTATTCCTCCTCTTCATTAG 2169 48.32 METNGHLDGTTSSSLLKSFCVSGNDIHHREDPLSWGAAAESMAGSHFEEVKRMVTEYRRPVVKLGGKTLTIAQVAAISAGVKTSVELSESARAGVQASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGTGTESCHTLPQSTTRAAMLVRINTLLQGYSGIRFQILEAMTKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPKGETLNAKEAFNKAGIDTGFFELQPKEGLALVNGTAVGSALASMVLYEANILAILSELLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLLAICQAIDLRHLEENLRNTVKNTVSQVAKRVLITGSNGELHPSRFCEKDLLKVVNREYVFAYIDDPCLATYPLMQKLRQVLVEHALTNGEGEKNASTSIFQKVGVFEEELKAILPKEVESARVAVESGNAVIPNQIKECRSYPLYKFVREELGTRLLTGEKAVSPGEECDKVFVALCEGKLIDPILDCLKEWNGAPIPPLH 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8569861 8572790 - Conep19aG0128200.1 Cone19ag1247 459684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1247 722 SUPERFAMILY L-aspartase-like 30 719 IPR008948 GO:0003824(InterPro)
Cone19ag1247 722 PANTHER HISTIDINE AMMONIA-LYASE 28 719 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cone19ag1247 722 FunFam Phenylalanine ammonia-lyase 534 655 - -
Cone19ag1247 722 Gene3D - 534 655 IPR023144 -
Cone19ag1247 722 FunFam Phenylalanine ammonia-lyase 22 267 - -
Cone19ag1247 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 203 219 IPR022313 GO:0016841(InterPro)
Cone19ag1247 722 Gene3D Fumarase/aspartase (Central domain) 268 716 - -
Cone19ag1247 722 Gene3D - 22 267 IPR024083 -
Cone19ag1247 722 CDD PAL-HAL 67 531 IPR001106 -
Cone19ag1247 722 Pfam Aromatic amino acid lyase 69 545 IPR001106 -
Cone19ag1247 722 FunFam Phenylalanine ammonia-lyase 268 590 - -
Cone19ag1247 722 NCBIfam phenylalanine ammonia-lyase 31 711 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1247 Cone-Chr19:8569861 Cone7ag0757 Cone-Chr7:4676806 7.33E-297 dispersed
Cone1ag1357 Cone-Chr1:56574402 Cone19ag1247 Cone-Chr19:8569861 0 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone19ag1247 Cone-Chr19:8569861 2.72E-128 wgd
Cone13ag1260 Cone-Chr13:9546345 Cone19ag1247 Cone-Chr19:8569861 0 wgd
Cone18ag0271 Cone-Chr18:1311305 Cone19ag1247 Cone-Chr19:8569861 0 wgd
Cone19ag1247 Cone-Chr19:8569861 Cone5ag0346 Cone-Chr5:1476230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1247 K10775 - rcu:8284514 1216.06