Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1251 ATGATAACATTTATGGAAACAAAAGAGAAATTAAAGGATGTGGAGAAATGCTTAGATCCTCAATTATGGCATGCTTGTGCTGGAGGAATGGTTCAAACGCCAACACTAAACAGCAAGGTCTTCTACTTCCCTCAAGGCCATGCCGAGCACGCCTGTGGGCCTGTTGATTTTCGGAATTGCCCGAGAATCCCCCCTTATATTCTCTGTAGAGTTTCTTCCATCAAGTTCATGGCTGATCCTGAAACTGATGAGGTTTTTGCCAAATTCAGCTTCATCCCCTCTAGTATTAATGAACTTGACCTTGAAGGTGATGATGATAGAATGGATGAGCTTAATGGGCCTGAATCTCAAGATAGACCGGCCTCATTCGCAAAGACATTGACTCAATCAGATGCAAACAATGGTGGAGGTTTCTCTGTTCCTCGTTATTGTGCTGAAACGATTTTTCCCAGATTGGATTATACAGCCGACCCTCCTGTCCAGACAATACTTGCCAAGGATGTTCATGGGGAGACATGGAAATTCAGACATATATATAGGGGGACACCAAGAAGGCATCTTTTAACAACCGGATGGAGTACTTTTGTGAACCAGAAAAAGCTCATTGCAGGCGATTCGATCGTGTTCTTGAGGGCTGAAAATGGCGATCTCTGTATCGGAATTCGTCGTGCGAAAAGGGGAGTTGGAGGTGGGCCTGAGTCTTCATCTGGGTGGAATCCAGCTGGTGGAAATTACACCATGCCTTATGGAGGATTTACAGCGTTTTTAAGGGAGGATGAGAGTAAATTAATGAGGAATGGTACTAATGTTAATGGAGTGAGCTCTAATGGTGGGGTAATGGGGAAAAGGAAAGTGAGGCCTGAATCTGTTATCGAGGCAGCTACTCTTGCGGCTAAAGGGCAACCTTTTGGGGTCGTTTACTATCCTCGAGCTAGTACACCTGAATTTTGTGTTAAGGCCTCTTTGGTGAAGACGGCATTAAAAATCCGGTGGTGCTCAGGAATGAGGTTCAAGATGGCATTTGAAACAGAGGATTCTTCGAGGATAAGCTGGTTCATGGGAACCATCTCTTCTGTTCAAGTTGCCGATCCTATTCTCTGGCCCGAGTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAGCCAGATTTACTGCAGAATGTAAAACGCGTAAGCCCATGGCTTGTGGAATTAGTATCAAACATGCCCGCCATTCATATGTCCCCTTTCTTACCCCCAAGGAAAAAACTGAGATTACTACCACACCCAGAATTCCCCCTAGATGGCTCACTTTCCATCCCAGGCTTTCCCAGAAACCTCCTTGGTGAGCCCACCACCACCAGCCCATTCGGTTGTCTACCCAACAACACCCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACCATGGTCTATCCTTATCAGATCTGCACCTCAATAAACTGCAGTCGGGTTTATTCTCAGTTAATTACCGTCCACAGGATCATTCTTCTACACCCATTAGATTATGGAACAACTCACTGATTCAAAAGCAGCCTAGCATGAGTACTGAAGATGTATCTTGCTTGTTAACCATAGCTTGTTCTACAGAAATTCCGAAAAAATCTGATAATGTAAAGACACCACCCAGGCTTGTACTTTTTGGTCAGCCTATACTAACCGAGCAGCAGATATCCAAGCGCTGCTCAGGTACTCTTCAGCAAGAATCGGAGTCAAGCATAGAGAAGACGGATGTAGTAGGTCATTCTCTTGATCTTTCATTGGTTGGATCTTTCGATGAATTGCAAGGGAAATTAGTGGATATGTGTGGGAGAGAGAACCCACGAGACCTTGAAACATGTAACGTACCGTGA 1851 45.38 MITFMETKEKLKDVEKCLDPQLWHACAGGMVQTPTLNSKVFYFPQGHAEHACGPVDFRNCPRIPPYILCRVSSIKFMADPETDEVFAKFSFIPSSINELDLEGDDDRMDELNGPESQDRPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRAENGDLCIGIRRAKRGVGGGPESSSGWNPAGGNYTMPYGGFTAFLREDESKLMRNGTNVNGVSSNGGVMGKRKVRPESVIEAATLAAKGQPFGVVYYPRASTPEFCVKASLVKTALKIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPILWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIHMSPFLPPRKKLRLLPHPEFPLDGSLSIPGFPRNLLGEPTTTSPFGCLPNNTPAGMQGARHAHHGLSLSDLHLNKLQSGLFSVNYRPQDHSSTPIRLWNNSLIQKQPSMSTEDVSCLLTIACSTEIPKKSDNVKTPPRLVLFGQPILTEQQISKRCSGTLQQESESSIEKTDVVGHSLDLSLVGSFDELQGKLVDMCGRENPRDLETCNVP 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8592477 8595869 + Conep19aG0128600.1 Cone19ag1251 459688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1251 616 Gene3D - 330 404 - -
Cone19ag1251 616 FunFam Auxin response factor 121 225 - -
Cone19ag1251 616 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 605 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone19ag1251 616 Gene3D - 121 225 IPR015300 -
Cone19ag1251 616 SMART B3_2 123 225 IPR003340 GO:0003677(InterPro)
Cone19ag1251 616 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677(InterPro)
Cone19ag1251 616 SUPERFAMILY DNA-binding pseudobarrel domain 116 228 IPR015300 -
Cone19ag1251 616 FunFam Auxin response factor 331 404 - -
Cone19ag1251 616 CDD B3_DNA 122 223 IPR003340 GO:0003677(InterPro)
Cone19ag1251 616 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677(InterPro)
Cone19ag1251 616 Pfam Auxin response factor 293 376 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1251 Cone-Chr19:8592477 Cone1ag0736 Cone-Chr1:6827721 3.46E-215 dispersed
Cone1ag0715 Cone-Chr1:6611878 Cone19ag1251 Cone-Chr19:8592477 4.90E-69 wgd
Cone10ag0249 Cone-Chr10:1202879 Cone19ag1251 Cone-Chr19:8592477 1.14E-233 wgd
Cone11ag1059 Cone-Chr11:8336690 Cone19ag1251 Cone-Chr19:8592477 4.36E-179 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone19ag1251 Cone-Chr19:8592477 0 wgd
Cone18ag0519 Cone-Chr18:2547457 Cone19ag1251 Cone-Chr19:8592477 1.07E-182 wgd
Cone19ag1251 Cone-Chr19:8592477 Cone3ag0278 Cone-Chr3:1451499 7.29E-250 wgd
Cone19ag1251 Cone-Chr19:8592477 Cone5ag1237 Cone-Chr5:5735524 4.26E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45373 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1251 K14486 - mdm:103450052 882.863