Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag1257 | ATGGGGAACATCGGGAGTACCGGAGCAAACAATCGTCGGAGACACGGCAGCCGCCGAAACCACCCTACGCCACCACCCTCGGCGACTCCTCAGCCGGAAATAACCGCGAACCGGTACGTTTTTGCTGCAGCAACCCCTTACCCTAACCACCCGCCTCAATACCCAAACCACCCGCCACCATACTACCAGTACCCAGGCTATTACCCACAGCCACCGCCACATCCACATTCGATGCCTTTGCCGGCACCGTTTGATCAGCACCACCGTGGTGCCCCTCACCCTCACATGGACCCCTCAAACTGGGTCGGAGGGAGGTATCCTTATGGGCCGGTTATGCAGCCTCAAACACCTTACGTCGAGCATCAGAAAGCGGTTACTATAAGAAATGATGTTAATCTTAAGAAGGAGACTCTGAGGGTCGAGCCTGATGAGCAGAATCCTGGTCGGTTTCTCGTGACTTTCACTTTTGATGCCACCGTTGCAGGAAGCGTCACAGTTTATTTCTTTGCTAAAGAAGGTGACGATTGTAACCTGACACCTATGAAAGAAAGCATTTTCAAACCCGTTACAGTACATTTTGAGCAAGGTCTAGGGCAGAAGTTTAGACAGCCATCTGGAACTGGGATTGAATTCTCAGCATTCCAGGAGTCTGATCTACTGAAAGTCAACGATGAGTTCATCTACCCATTAGTCATAAAGGCAGAGGCTTCTTCTCCGGACAACCAAACGGGGCAGGACGGAAACCCAGAACATGGAAATACAAATTCCCAGATAACTCAGGCAGTGTTTGAGAAAGAGAAAGGCGAGTTTCAAGTGAGAGTTGTAAAGCAGATCTTGTGGGTAAATGGAATGAGATATGAGCTGCAAGAGATATATGGGATTGGGAATTCGGTTGAGGGTGAGATGGATGGAAATGATAATGGAAAAGAATGCGTCATTTGCTTGTCGGAACCAAGGGACACCACTGCCCTTCCTTGCCGCCACATGTGCATGTGCAATGGATGTGCAAAGGTTTTGAGGTTTCAGACAAATAGGTGTCCGATATGCAGACAACCGATCGACAGGCTTCTAGAGATTAAGGTCAGCAATGTGCCTGATGAATGA | 1104 | 49.28 | MGNIGSTGANNRRRHGSRRNHPTPPPSATPQPEITANRYVFAAATPYPNHPPQYPNHPPPYYQYPGYYPQPPPHPHSMPLPAPFDQHHRGAPHPHMDPSNWVGGRYPYGPVMQPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEQNPGRFLVTFTFDATVAGSVTVYFFAKEGDDCNLTPMKESIFKPVTVHFEQGLGQKFRQPSGTGIEFSAFQESDLLKVNDEFIYPLVIKAEASSPDNQTGQDGNPEHGNTNSQITQAVFEKEKGEFQVRVVKQILWVNGMRYELQEIYGIGNSVEGEMDGNDNGKECVICLSEPRDTTALPCRHMCMCNGCAKVLRFQTNRCPICRQPIDRLLEIKVSNVPDE | 367 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 8616095 | 8618615 | + | Conep19aG0129200.1 | Cone19ag1257 | 459694 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag1257 | 367 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Cone19ag1257 | 367 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 360 | IPR013083 | - | |
| Cone19ag1257 | 367 | CDD | mRING-HC-C3HC5_MGRN1-like | 309 | 350 | IPR045195 | - | |
| Cone19ag1257 | 367 | FunFam | probable E3 ubiquitin-protein ligase LOG2 | 295 | 360 | - | - | |
| Cone19ag1257 | 367 | PANTHER | MAHOGUNIN | 1 | 363 | IPR045194 | GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER) | |
| Cone19ag1257 | 367 | Pfam | Zinc finger, C3HC4 type (RING finger) | 309 | 355 | - | - | |
| Cone19ag1257 | 367 | ProSiteProfiles | Zinc finger RING-type profile. | 311 | 350 | IPR001841 | - | |
| Cone19ag1257 | 367 | SUPERFAMILY | RING/U-box | 310 | 356 | - | - | |
| Cone19ag1257 | 367 | SMART | ring_2 | 311 | 349 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag1257 | Cone-Chr19:8616095 | Cone7ag0215 | Cone-Chr7:920899 | 2.96E-91 | dispersed | |
| Cone10ag0253 | Cone-Chr10:1216381 | Cone19ag1257 | Cone-Chr19:8616095 | 3.36E-145 | wgd | |
| Cone13ag1269 | Cone-Chr13:9587451 | Cone19ag1257 | Cone-Chr19:8616095 | 6.31E-224 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag1257 | K27504 | - | csv:101216150 | 563.148 |