Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1261 ATGTCCGCTAATGGTTTTTACATGCCTAGCTCTTTGCTTGAAGGTTTTGCTCAAGAACAAAATCCAAACCCTAACCCTATCATTCCCAATCATAATCCTGCAGCTAAGAAGAAGAGAAATCAACCCGGAACACCAGATCCAGATGCCGAGGTAATTGCTTTATCGCCGAAGACGCTTATGGCGACGAACCGATTCGTGTGCGAGATTTGCAACAAAGGGTTTCAAAGAGACCAGAATTTACAGCTTCATCAGAGAGGTCATAATCTACCATGGAAGTTGAAGAAAAGAGCAAACAAGGAGGTTGTTAAGAAGAAGGTGTACATTTGTCCCGAAAAAACATGCGTTCACCACGACCCGTCTCGAGCGCTAGGCGACCTCACCGGAGTGAAGAAACATTTCAGTAGGAAACACGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAGAAATATGCAGTTCAATCCGACTGGAAAGCTCACTCTAAAACTTGTGGAACTAGAGAGTACAAATGTGATTGTGGTACCCTCTTTTCCAGGAAGGATAGCTTCATAACCCATAGGGCATTCTGCGATGCCTTATTAGCTACAAATCTGCATTTCAGAAACGACACATCGTCAGTAAATGCTCCTCATCATCAATCTCTGAACAACATTTCTCAGTCCGACCCGGGTCTAATTCTTTCTGATTTCAAGGATCCGTTGAACATAATAGATTCACAAAAGCCTAGATTGTCACTGCAACATAATAACTTGTGGAATAATCAAGCAAACTTCAGTCCCATGGATGAAGCAGCAATGCTTATGGCTAATCCTAGTAATGATCCAGCTTTCCGGTCAAACGCTGATGACCAGTTTGACCCATTTAACATGGCGTCAGCAAACGCAGCCTTTTCAATGGAATACTCAAAGCCAGTTCCAAGCATGGCGTCATCAGCAACAGCCCTTCTGCAGAAAGCTGCTCAAATGGGTTCGACAAGAAGCAAAGCAGCATCCGGCATGCTCGATATGAGCAACTTTAATGGAGTCATTATGAGCTCACCTTCTTCATCTTCTTCTCCGTCCAACCGGCGGACGATCTTCGATCATCTAACGTTGATGGGTGATCATAGACGTCTTCAGCTGGCAGGCGGCTCGAATCATATAAGCACTAGTAGCACTACTTCATCCAACTACAGTTCTACAAGCGGCGCTGCTAATTTTGATCCCCAGCTTATGGTTCAAAGTAGAGCAGGAAACCATGCTCAGGCCGGGTTGAAGTTTGAGCTGACTAGAGATTTTCTTGGAATGGGAAGGGGAGAAGCTCCTTATCATGATCAGTTAGCCGAGTTTGCTTCCATGAAGTCTGCCATGGATTTTAGCCGATACAGTCGCAACCACACGTAA 1383 44.69 MSANGFYMPSSLLEGFAQEQNPNPNPIIPNHNPAAKKKRNQPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHQRGHNLPWKLKKRANKEVVKKKVYICPEKTCVHHDPSRALGDLTGVKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALLATNLHFRNDTSSVNAPHHQSLNNISQSDPGLILSDFKDPLNIIDSQKPRLSLQHNNLWNNQANFSPMDEAAMLMANPSNDPAFRSNADDQFDPFNMASANAAFSMEYSKPVPSMASSATALLQKAAQMGSTRSKAASGMLDMSNFNGVIMSSPSSSSSPSNRRTIFDHLTLMGDHRRLQLAGGSNHISTSSTTSSNYSSTSGAANFDPQLMVQSRAGNHAQAGLKFELTRDFLGMGRGEAPYHDQLAEFASMKSAMDFSRYSRNHT 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8626165 8628135 - Conep19aG0129600.1 Cone19ag1261 459698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1261 460 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Cone19ag1261 460 SMART c2h2final6 65 87 IPR013087 -
Cone19ag1261 460 SMART c2h2final6 142 162 IPR013087 -
Cone19ag1261 460 SMART c2h2final6 107 137 IPR013087 -
Cone19ag1261 460 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 168 197 - -
Cone19ag1261 460 Gene3D Classic Zinc Finger 120 196 - -
Cone19ag1261 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 432 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone19ag1261 460 Gene3D Classic Zinc Finger 43 118 - -
Cone19ag1261 460 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 141 165 - -
Cone19ag1261 460 MobiDBLite consensus disorder prediction 16 48 - -
Cone19ag1261 460 MobiDBLite consensus disorder prediction 376 395 - -
Cone19ag1261 460 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 103 137 - -
Cone19ag1261 460 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Cone19ag1261 460 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Cone19ag1261 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Cone19ag1261 460 Pfam Zinc finger, C2H2 type 65 87 IPR013087 -
Cone19ag1261 460 FunFam protein indeterminate-domain 12-like 44 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1261 Cone-Chr19:8626165 Cone3ag1314 Cone-Chr3:32052872 1.04E-101 dispersed
Cone10ag0256 Cone-Chr10:1223433 Cone19ag1261 Cone-Chr19:8626165 7.39E-118 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone19ag1261 Cone-Chr19:8626165 7.28E-87 wgd
Cone13ag1273 Cone-Chr13:9597910 Cone19ag1261 Cone-Chr19:8626165 3.66E-234 wgd
Cone18ag0291 Cone-Chr18:1420318 Cone19ag1261 Cone-Chr19:8626165 4.82E-102 wgd
Cone19ag1261 Cone-Chr19:8626165 Cone3ag0282 Cone-Chr3:1468105 1.10E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45374 PF00244 2014/3/3 8.80E-101 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1261 K25870 - csv:101213422 388.267