Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1277 ATGTACACGACGGAGAACATCGTCGGAGAGCATAGCGGCGGTGATTTCAATCTGGATGGCGATATATTGGATGTGTACTTTCCTCAGAGCCAGTTCACTGTCGAAAATGGATGGCTAAAGCTGATCTCACAGCTCATTTTTTTCTTTTCTTCTCCATCCGGTCAAATCCTTGCCTCTCAGGTTAAAGAGGACGGTGATGGTATCTTTGTTCTGTCGATTGACTTTCAACAATTACGGAAAATATGCGAAGTTGGTGAATTTTATGCTATGTTAGAGGATACTCCTAAAATTGCTCTAAAATGTATGAGCACGGCACTTCACCAGATTCTATTGACCATAGGAGAGAGCAGGTTGGAATGTAGTGCGAAAGTGATTATTCGCCTGCACAATTACTCACAGTCTATTATCACTCTGAAGAACTTAAAAGCAGCTTATATCGATAAACTTGTGTCCGTGCACGGTACTGTGGTTAAAGTAAGCATGGTCAAGCCTCTGGTGGTACAAATGACTTTTGATTGTGCAAAGTGTAAAAGCAGCATCACACGCATCTTTCCTGATGGAAAGTTTTCACCACCACCAACTTGTGAGCTACATGGATGCAAAAGCAAAACATTTCTTCCAATTCGATCAACTGCCCGAGCAATAGATATTCAGAAAATACGGGTACAGGAACTTATTAAGTCTGAAGATCGTGAAGAAGGTAGGGTTCCTCGGACTGTAGAATGTGAACTGACTGACGATCTTGTAGATGCATGCATTCCAGGGGATGTGGTGACAGTTACTGGAATTATTCGAGTAATTAACAATTACATGGACATTGGTGGAGGAAAATCTAAGAGTAAAAATCAAGGATTTTACTATTTATATCTGGAAGCAGTTTCAATCAGAAACTCCAAGTCACAATCTGTCAATCAGGATTCGCAAGAGTCTGATTCTCATGCCAGGGTAACGGAGCTGCTTGACTTATTCTCATTCTCTCCGCGGGATTTGGAATTTATTGTGAAGTTCTCAGGGGAACATGGCTCAGATGTCTTCCGGCAAATCCTTCAGTCTGTGTGTCCATCTATATACGGACATGAGCTTGTTAAAGCGGGAATAACACTAGCGCTATTTGGAGGTGTACAAAAGCATGTAAAAGACCAGAACAAGGTTCCTGTCAGAGGGGACATTCATGTCATTATAGTTGGTGATCCTGGACTAGGCAAGAGCCAACTGCTACAAGCAGCAGCTGCTCTTTCTCCACGTGGTATTTATGTCTGTGGTAATGCCACCACGAAAGCTGGTCTAACTGTAGCTGTTGTGAAGGACCCCATGACAAGTGACTATTCTTTTGAGGCTGGTGCTATGGTACTTGCGGATGGTGGACTATGCTGCATCGATGAGTTTGATAAAATGTCTGCTGCACATCAGTCCCTCCTAGAAGCCATGGAGCAACAATGTGTCTCAATTGCAAAGGCTGGGTTGGTAGCTAGTTTATCAGCGCGCACTTCTGTCCTTGCTGCAGCAAATCCTGTTGGAGGTCATTATAACCGTGCAAAAACTGTGAATGAAAACTTGAAAATGAGTGCTCCTCTTCTTTCACGGTTTGATTTAGTCTTTATGCTGCTGGATAAACCAGATGAGCTTCTGGATAAGCGAGTCTCAGAGCACATCATGTCACTACATGCTGGATATGGGGAACATTTTCCTTCGTCAGAAAAGCCATGCAAAGGATCAGGGTTCTCCCCAGTTATGCCTTCTCCCTCACGTAATACCACATCAGAGAACGCTGGCGTAACAGGTGGCTCTTTAGTTTCAAGGATGAGACTTGATCCATTGAGGGATAGTGATTTTGTTCCCTTACCTGGCCAACTTCTTCGCAAATATGTAGCTTATGCAAGAAGCTATGTCTTCCCCAGGATGTCAAAGGCGGCGGCAGAAATCCTGCAGAAGTTTTACTTGCGCCTCAGAGACCACAATTCATCAGCTGATGGCACTCCAATAACAGCTAGGCAGCTGGAAAGTCTAGTGAGGTTGGCAGAAGCTCGAGCTAGAATCGATTTAAGAGAAGAAATAACAGCTCAAGATGCTATGGATGTAGTTGAAATAATGAAGGAATCGCTCTATGATAAGTATGTGGATGAGCACGGCATTGTGGATTTCGGAAGAAGTGGAGGGATGAGTCAACAAAAAGAAGCCAAACGGTTTCTTAGTGCCCTCAATAAGCAATCGGATTTGCAACAGAAAGACTGTTTTTCAATTTCTGAAATATATAGTTTAGCGGATAGAATCTGTCTTAGAGTTCCGGATATCGACACCTTTATAGAGAATCTCAACAGTGTTGGTTATCTACTTAAGAAGGGACCAAAGACGTATCAGGTGTTATCATCATCTTATACAGGTCAATCATCAAGGTCAAGGGGCTAA 2406 43.06 MYTTENIVGEHSGGDFNLDGDILDVYFPQSQFTVENGWLKLISQLIFFFSSPSGQILASQVKEDGDGIFVLSIDFQQLRKICEVGEFYAMLEDTPKIALKCMSTALHQILLTIGESRLECSAKVIIRLHNYSQSIITLKNLKAAYIDKLVSVHGTVVKVSMVKPLVVQMTFDCAKCKSSITRIFPDGKFSPPPTCELHGCKSKTFLPIRSTARAIDIQKIRVQELIKSEDREEGRVPRTVECELTDDLVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKNQGFYYLYLEAVSIRNSKSQSVNQDSQESDSHARVTELLDLFSFSPRDLEFIVKFSGEHGSDVFRQILQSVCPSIYGHELVKAGITLALFGGVQKHVKDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAALSPRGIYVCGNATTKAGLTVAVVKDPMTSDYSFEAGAMVLADGGLCCIDEFDKMSAAHQSLLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAPLLSRFDLVFMLLDKPDELLDKRVSEHIMSLHAGYGEHFPSSEKPCKGSGFSPVMPSPSRNTTSENAGVTGGSLVSRMRLDPLRDSDFVPLPGQLLRKYVAYARSYVFPRMSKAAAEILQKFYLRLRDHNSSADGTPITARQLESLVRLAEARARIDLREEITAQDAMDVVEIMKESLYDKYVDEHGIVDFGRSGGMSQQKEAKRFLSALNKQSDLQQKDCFSISEIYSLADRICLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTGQSSRSRG 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8691936 8696121 + Conep19aG0131200.1 Cone19ag1277 459714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1277 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 707 IPR027417 -
Cone19ag1277 801 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 64 786 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Cone19ag1277 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 387 402 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 498 510 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 461 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 525 533 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 PRINTS Mini-chromosome maintenance (MCM) protein family signature 474 487 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 FunFam DNA helicase MCM8 isoform X1 165 216 - -
Cone19ag1277 801 Pfam MCM OB domain 138 267 IPR033762 -
Cone19ag1277 801 SUPERFAMILY Nucleic acid-binding proteins 67 268 IPR012340 -
Cone19ag1277 801 SMART AAA_5 388 540 IPR003593 GO:0016887(InterPro)
Cone19ag1277 801 Pfam MCM AAA-lid domain 618 701 IPR041562 -
Cone19ag1277 801 Gene3D - 138 268 IPR012340 -
Cone19ag1277 801 Pfam MCM P-loop domain 342 555 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 Gene3D - 322 710 IPR027417 -
Cone19ag1277 801 CDD MCM8_WHD 723 788 - -
Cone19ag1277 801 Gene3D - 165 215 - -
Cone19ag1277 801 MobiDBLite consensus disorder prediction 569 593 - -
Cone19ag1277 801 CDD MCM8 348 700 - -
Cone19ag1277 801 ProSiteProfiles MCM family domain profile. 344 551 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Cone19ag1277 801 MobiDBLite consensus disorder prediction 577 593 - -
Cone19ag1277 801 SMART mcm 134 702 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1277 Cone-Chr19:8691936 Cone3ag1220 Cone-Chr3:30947681 6.22E-88 dispersed
Cone19ag1277 Cone-Chr19:8691936 Cone16ag0446 Cone-Chr16:6781760 9.55E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1277 K10737 - csv:101211972 1236.48