Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1279 ATGGCCGAAGTTCCGGTAAGTCCCGGCGGAGGGAGCCACGAGAGTGGCGAGCATAGTCCCCGGTCAAATTTTCGTGAACAGGACAGGTACCTTCCGATTGCTAATATCAGTAGGATTATGAAGAAAGCTCTCCCTGCGAATGGAAAAATTGCTAAGGATGCTAAGGAGACTGTACAGGAATGTGTCTCTGAGTTCATAAGCTTCGTCACCAGCGAGGCAAGTGATAAATGCCAGAGAGAGAAGAGGAAGACGATTAATGGCGATGATTTGTTATGGGCAATGGCAACTCTAGGTTTCGAAGATTATATTGATCCGCTTAAAATTTACTTGGCTAGATATAGAGAGTTGGAGGGTGATACCAAGGGGTCTGCAAAGGTTGGAGATGCATCTGCTAGGAGAGATGTTCAATTAACTCCAAATTCTCAGGTTGTTCGCCAAGGATCTTTCTCTCAGGGGGTAAATTATGCCAGCTCTCAGTCGCAACCTCAACATCTGGTGGCGCCTATGCGGGGTGCTGAGTAG 522 47.32 MAEVPVSPGGGSHESGEHSPRSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYRELEGDTKGSAKVGDASARRDVQLTPNSQVVRQGSFSQGVNYASSQSQPQHLVAPMRGAE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8705820 8707679 - Conep19aG0131400.1 Cone19ag1279 459716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1279 173 SUPERFAMILY Histone-fold 27 154 IPR009072 GO:0046982(InterPro)
Cone19ag1279 173 MobiDBLite consensus disorder prediction 134 165 - -
Cone19ag1279 173 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone19ag1279 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cone19ag1279 173 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cone19ag1279 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cone19ag1279 173 Gene3D Histone, subunit A 17 151 IPR009072 GO:0046982(InterPro)
Cone19ag1279 173 MobiDBLite consensus disorder prediction 121 173 - -
Cone19ag1279 173 MobiDBLite consensus disorder prediction 1 28 - -
Cone19ag1279 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cone19ag1279 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 154 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone19ag1279 173 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0499 Cone-Chr17:2465361 Cone19ag1279 Cone-Chr19:8705820 4.16E-48 dispersed
Cone19ag1279 Cone-Chr19:8705820 Cone8ag1366 Cone-Chr8:10907603 1.09E-58 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone19ag1279 Cone-Chr19:8705820 6.79E-67 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone19ag1279 Cone-Chr19:8705820 4.42E-99 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone19ag1279 Cone-Chr19:8705820 1.20E-85 wgd
Cone19ag1279 Cone-Chr19:8705820 Cone3ag0290 Cone-Chr3:1505735 4.16E-99 wgd
Cone19ag1279 Cone-Chr19:8705820 Cone5ag0323 Cone-Chr5:1363391 1.96E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45376 PF13041 PPR_2 6.40E-08 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1279 K08065 - gmx:100798667 286.189