Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone19ag1279 | ATGGCCGAAGTTCCGGTAAGTCCCGGCGGAGGGAGCCACGAGAGTGGCGAGCATAGTCCCCGGTCAAATTTTCGTGAACAGGACAGGTACCTTCCGATTGCTAATATCAGTAGGATTATGAAGAAAGCTCTCCCTGCGAATGGAAAAATTGCTAAGGATGCTAAGGAGACTGTACAGGAATGTGTCTCTGAGTTCATAAGCTTCGTCACCAGCGAGGCAAGTGATAAATGCCAGAGAGAGAAGAGGAAGACGATTAATGGCGATGATTTGTTATGGGCAATGGCAACTCTAGGTTTCGAAGATTATATTGATCCGCTTAAAATTTACTTGGCTAGATATAGAGAGTTGGAGGGTGATACCAAGGGGTCTGCAAAGGTTGGAGATGCATCTGCTAGGAGAGATGTTCAATTAACTCCAAATTCTCAGGTTGTTCGCCAAGGATCTTTCTCTCAGGGGGTAAATTATGCCAGCTCTCAGTCGCAACCTCAACATCTGGTGGCGCCTATGCGGGGTGCTGAGTAG | 522 | 47.32 | MAEVPVSPGGGSHESGEHSPRSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYRELEGDTKGSAKVGDASARRDVQLTPNSQVVRQGSFSQGVNYASSQSQPQHLVAPMRGAE | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8705820 | 8707679 | - | Conep19aG0131400.1 | Cone19ag1279 | 459716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone19ag1279 | 173 | SUPERFAMILY | Histone-fold | 27 | 154 | IPR009072 | GO:0046982(InterPro) | |
Cone19ag1279 | 173 | MobiDBLite | consensus disorder prediction | 134 | 165 | - | - | |
Cone19ag1279 | 173 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone19ag1279 | 173 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Cone19ag1279 | 173 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Cone19ag1279 | 173 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Cone19ag1279 | 173 | Gene3D | Histone, subunit A | 17 | 151 | IPR009072 | GO:0046982(InterPro) | |
Cone19ag1279 | 173 | MobiDBLite | consensus disorder prediction | 121 | 173 | - | - | |
Cone19ag1279 | 173 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cone19ag1279 | 173 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Cone19ag1279 | 173 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 16 | 154 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone19ag1279 | 173 | FunFam | Nuclear transcription factor Y subunit B-3 | 19 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0499 | Cone-Chr17:2465361 | Cone19ag1279 | Cone-Chr19:8705820 | 4.16E-48 | dispersed | |
Cone19ag1279 | Cone-Chr19:8705820 | Cone8ag1366 | Cone-Chr8:10907603 | 1.09E-58 | dispersed | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone19ag1279 | Cone-Chr19:8705820 | 6.79E-67 | wgd | |
Cone10ag0264 | Cone-Chr10:1261543 | Cone19ag1279 | Cone-Chr19:8705820 | 4.42E-99 | wgd | |
Cone13ag1293 | Cone-Chr13:9673921 | Cone19ag1279 | Cone-Chr19:8705820 | 1.20E-85 | wgd | |
Cone19ag1279 | Cone-Chr19:8705820 | Cone3ag0290 | Cone-Chr3:1505735 | 4.16E-99 | wgd | |
Cone19ag1279 | Cone-Chr19:8705820 | Cone5ag0323 | Cone-Chr5:1363391 | 1.96E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45376 | PF13041 | PPR_2 | 6.40E-08 | CL0020 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone19ag1279 | K08065 | - | gmx:100798667 | 286.189 |