Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1280 ATGCAGACAGCTGTTGTTGGAAGAAATGGTTCGTTAACTTACCGGTTGAATCTGGATGGTTTTCCTGGTACTGGTTGGGCATTTACTTACTTTGCAGAAATTGAAGATTTTGATGGAACACAGTCAAGAAAATTCAGATTGGTACTACCTGGCCAGCCTGATGTTAGCAAAGCTGTTGTTAACATTGAAGAAAATGCTCGAGGAAAATATCGTCTCTATGAGCCAGGATACTACAACTTAACCCTCCCTTTTGTGTTATCTTTTAGATTTGGGAAGACATCAGATTCTACCTTGGGCCCTCTTCTAAATGCTATGGAGATTAGTAAATATCTCAAGAAAAGTGATGGTTCTCTAGATGGTAAAAGCAGCTATTGGAGGTGTAGTTTCACATTACTCATCAGAAGACTGGGCTCAAGAAGGTGGAGATCCATGTGCACCAGCCCCATGGTCCCATGGTCGTGGTTGGAATGTAACTCAGTTCCACAACCAAGAATAGTTAAAATTTCCTTGTCCAAAAAGAATTTGACAGGGAGTATCCCTTCAGACTTGATGTCGCTAACGGGTTTGGTTGAATTATGGCTTGATGGGAATTCATTAACTGGTTCGATACCTGATTTCGCTGGATGTGTGAACTTGAAGATCCTTCATCTCGAGAACAATCAGTTGACTGGAGAACTGACCTCATCTTTGGCGAATCTGCCTAATTTGAGGGAACTGTATGTGCAGAATAACATGTTATCCGGAACAGTCCCGTCAAGTCTTCTAAATAAAAACTTGGTTTTTGACTACTCTCAAAACCTTAATCTTCATAAAGGAAAAGGAAAAGGGAGCCGTCTAGCTATCATTATTGGTACATCAGTTGGTGCTACTGTGTTGCTGATAGCTACGATTGTGTCTTGCCTCCTCTTGCGGAAAGGGAAGAAAAGACATCAAGATCTAGGTCTTCCTAGAGAATCCTTTGCTGTGCAAAGGCATGTTTCTACAAAAGGTGAAGGCACAGAAGCAGCACATTGTTTCTCATCCGAAGAAATTGAAGATGCTACAAGATATTTCAAGACGAAAATTGGTTCCGGAGGTTTTGGCGTTGTATACTATGGAAAATTGGATGACGGAAAGGAAATTGCAGTCAAAGTTCTGACCAGTAACTCCTACCAGGGAAAGCGAGAGCTTTCAAGTGAGGTGACTCTTTTGTCTAGGATTCATCACAGAAATTTGGTTCAATTTGTTGGTTATTGTCAAGAAGAAGGGAGAAGCATGCTCATTTATGAGTTCATGCATAATGGAACTCTCAAGGAGCACCTTTATGGACCTTTAACACGTGAAAGAAGTATAAACTGGATCAAGCGCCTTGAAATTGCCGAAGATTCCGCAAAAGGAATCGAGTACCTTCACACGGGCTGTGTTCCGGCCATTATTCATAGGGATCTGAAAAGCAGCAATATTCTTCTCGACAAACATATGAGGGCAAAAGTTTCTGATTTTGGTCTATCCAAGCTTGCAGTGGATGGTGCCTCCCATGTGTCTAGCATTGTTCGAGGAACTGTTGGATATTTGGATCCCGATTTTGGTGTCATTCTTCTCGAGTTGATATCCGGTCAAGAAGCTATATCTAATGAAAACTTTGGAGTTAATTGTCGCAACATAGTCCAATGGGCGAAATTGCATATTGAAAGTGGCGACATTCGAGGGATTATAGATCCATCCCTACGTAATGAATATGATATTCAATCAGTGTGGAAGATAGCAGAGAAGGCCTTGATGTGTGTCCAGCCCCATGGACATATGAGGCCGTTCATATCGGAAGTGCTAAAGGAGATCCAGGCTGCAATTTCTATCGAAAAAGAAGCTGAAGCAGCTAGAGAAGGCAACTCAGATGATATGTCCAAAAATTCAATCCATTCTTCACTGAATATGGGATTACTTGATCTAGGCAGACCAGAGAATTACATCTCCTTTGATGACTCCATTGCTCGGCCCACCGCCCAGTAG 1989 41.88 MQTAVVGRNGSLTYRLNLDGFPGTGWAFTYFAEIEDFDGTQSRKFRLVLPGQPDVSKAVVNIEENARGKYRLYEPGYYNLTLPFVLSFRFGKTSDSTLGPLLNAMEISKYLKKSDGSLDGKSSYWRCSFTLLIRRLGSRRWRSMCTSPMVPWSWLECNSVPQPRIVKISLSKKNLTGSIPSDLMSLTGLVELWLDGNSLTGSIPDFAGCVNLKILHLENNQLTGELTSSLANLPNLRELYVQNNMLSGTVPSSLLNKNLVFDYSQNLNLHKGKGKGSRLAIIIGTSVGATVLLIATIVSCLLLRKGKKRHQDLGLPRESFAVQRHVSTKGEGTEAAHCFSSEEIEDATRYFKTKIGSGGFGVVYYGKLDDGKEIAVKVLTSNSYQGKRELSSEVTLLSRIHHRNLVQFVGYCQEEGRSMLIYEFMHNGTLKEHLYGPLTRERSINWIKRLEIAEDSAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPDFGVILLELISGQEAISNENFGVNCRNIVQWAKLHIESGDIRGIIDPSLRNEYDIQSVWKIAEKALMCVQPHGHMRPFISEVLKEIQAAISIEKEAEAAREGNSDDMSKNSIHSSLNMGLLDLGRPENYISFDDSIARPTAQ 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8708467 8711898 - Conep19aG0131500.1 Cone19ag1280 459717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1280 662 FunFam Os07g0541700 protein 425 514 - -
Cone19ag1280 662 FunFam Leucine-rich repeat receptor-like protein kinase 325 424 - -
Cone19ag1280 662 Pfam Leucine Rich Repeat 235 255 IPR001611 GO:0005515(InterPro)
Cone19ag1280 662 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515(InterPro)
Cone19ag1280 662 Pfam Leucine Rich Repeat 189 206 IPR001611 GO:0005515(InterPro)
Cone19ag1280 662 SUPERFAMILY L domain-like 148 256 - -
Cone19ag1280 662 SUPERFAMILY Protein kinase-like (PK-like) 336 605 IPR011009 -
Cone19ag1280 662 Gene3D Ribonuclease Inhibitor 133 275 IPR032675 -
Cone19ag1280 662 Pfam Malectin-like domain 1 109 IPR024788 -
Cone19ag1280 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1280 662 Gene3D Phosphorylase Kinase; domain 1 322 424 - -
Cone19ag1280 662 PANTHER OS07G0107800 PROTEIN-RELATED 207 613 - -
Cone19ag1280 662 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524(InterPro)
Cone19ag1280 662 ProSiteProfiles Protein kinase domain profile. 349 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1280 662 Gene3D Transferase(Phosphotransferase) domain 1 425 634 - -
Cone19ag1280 662 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 161 250 - -
Cone19ag1280 662 Pfam Protein tyrosine and serine/threonine kinase 351 500 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1280 662 SMART serkin_6 349 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1094 Cone-Chr19:7940086 Cone19ag1280 Cone-Chr19:8708467 4.88E-183 dispersed
Cone19ag1280 Cone-Chr19:8708467 Cone8ag0196 Cone-Chr8:1028510 4.40E-81 dispersed
Cone10ag0847 Cone-Chr10:4317044 Cone19ag1280 Cone-Chr19:8708467 3.54E-59 wgd
Cone13ag1294 Cone-Chr13:9676434 Cone19ag1280 Cone-Chr19:8708467 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82417 PF04577 DUF563 3.70E-17 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1280 - - - 0.0