Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1288 ATGACGGAAAATGGGCATTGTCGGCTGCAAGAAGAAAATCTAAATCACTACCAGCATGGTGGGAAGAAAAGAATTATGGAGGGAGTTATTGGCGAGAAAGGAAACACCCCCGAGGAAGGTGAATTGATATTTAATGGAATAGCTGAAGATTCAGGGGTCGGTCGAGGAGGACCTGTTCAAACCAAGGTTTCTCTGCGAGTACAGCAGCAACTACAGCCGCAAGGAGCAGTGGTCTGCTGGGAGAGATTTCTAAATCTTAGATCTCTAAAGGTCTTGTTGGTAGAAAATGATGATTCAACTCGTCTTATTGTCGCTGCTCTGCTTCACAATTGCAGTTATGAAGTTATTGAATGTTCAAATGGACAACAAGCTTGGACGATACTAGAAGATCTGACCAACCATGTTGATCTAGTCTTAACTGAGGTAGTAATGCCTTATTTATCTGGCATTGGTTTATTAAGCAAGATCATAAACCATAAAACACTCAAGACTGTTCCAGTAATTATGATGTCGTCTTATGACTCGATGGGTCTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTCGACTTTTTAGTGAAGCCAGTACGAAAGAATGAATTGAAGAACCTTTGGCAGCATGTTTGGAGAAGAAACCATAGTTCAAGTGGCAGTGGTAGCGAAAGTGAAACACAGACACAAAAATCTTCGAACTCGAAAAGGGTTGTTAAGTTTGAGAACAACTCAGGCAGCAATGATGAGGAACAGAATGGGTGTGTTGGGTTGGATAGTGGAGATGGCAGTGATAATGGTAGTGCAAATCAGAGCTCTTGGACAAAACAAGCTCTAGAACTGGGAAGCCCTCTACCAGAGTCCCTATGTGATCAGATACTCAAATGTCCTGATAGTACTTGTGCTCTCGTTGTCCACTCAAATGATGAAGCACCTGATAATAACATCTCTATTCCGGCGTCGGAGTGCCAGGATCAGAAAAAACAACTTGACAGTTTTGCAAAAGACATGGAGATAGACATGCCTAGAAATCCTCATTTTCTGAACGCACATTCCAAATTTTTAGACATCAACCACAACGCTACCAAGGACTATGAAGAACATCCATCTGTTAAGCTGTCTAAAAGCTATTAG 1122 41.8 MTENGHCRLQEENLNHYQHGGKKRIMEGVIGEKGNTPEEGELIFNGIAEDSGVGRGGPVQTKVSLRVQQQLQPQGAVVCWERFLNLRSLKVLLVENDDSTRLIVAALLHNCSYEVIECSNGQQAWTILEDLTNHVDLVLTEVVMPYLSGIGLLSKIINHKTLKTVPVIMMSSYDSMGLVFKCLSKGAVDFLVKPVRKNELKNLWQHVWRRNHSSSGSGSESETQTQKSSNSKRVVKFENNSGSNDEEQNGCVGLDSGDGSDNGSANQSSWTKQALELGSPLPESLCDQILKCPDSTCALVVHSNDEAPDNNISIPASECQDQKKQLDSFAKDMEIDMPRNPHFLNAHSKFLDINHNATKDYEEHPSVKLSKSY 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8731478 8735362 + Conep19aG0132300.1 Cone19ag1288 459725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1288 373 MobiDBLite consensus disorder prediction 211 250 - -
Cone19ag1288 373 FunFam Two-component response regulator-like PRR37 89 247 - -
Cone19ag1288 373 Gene3D - 88 256 - -
Cone19ag1288 373 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160(InterPro)
Cone19ag1288 373 PANTHER TWO-COMPONENT RESPONSE REGULATOR 82 271 IPR045279 GO:0009736(InterPro)
Cone19ag1288 373 SUPERFAMILY CheY-like 87 214 IPR011006 -
Cone19ag1288 373 SMART REC_2 89 204 IPR001789 GO:0000160(InterPro)
Cone19ag1288 373 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160(InterPro)
Cone19ag1288 373 MobiDBLite consensus disorder prediction 211 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1288 Cone-Chr19:8731478 Cone1ag1021 Cone-Chr1:55118294 3.44E-45 dispersed
Cone10ag0269 Cone-Chr10:1282359 Cone19ag1288 Cone-Chr19:8731478 6.88E-67 wgd
Cone11ag1091 Cone-Chr11:8511929 Cone19ag1288 Cone-Chr19:8731478 5.33E-78 wgd
Cone11ag1274 Cone-Chr11:9470078 Cone19ag1288 Cone-Chr19:8731478 1.37E-86 wgd
Cone13ag1299 Cone-Chr13:9702566 Cone19ag1288 Cone-Chr19:8731478 2.98E-65 wgd
Cone18ag0310 Cone-Chr18:1521944 Cone19ag1288 Cone-Chr19:8731478 4.62E-83 wgd
Cone19ag1288 Cone-Chr19:8731478 Cone3ag0296 Cone-Chr3:1530099 1.26E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45378 PF13967 RSN1_TM 1.60E-38 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1288 K12129 - csv:101210765 390.578