Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1300 ATGAGGAGTCGCTGCTTCCACGCCAGAACGTCGTCCTATTTCATCTCCAGCGATTCGAATTCATCACCGAAGATGAGAACTTCAGACTCAGCAACGTCGCCTCGTGATCATTTCTCAGATTCGATGATACTACTAGAAAAGAGCATTGAAGCGGCAGAACCGATGATTTTGAAATGGAATCCAGAATCTTCCGCCTTCGCTAAAGTTACTTCGATGTTGTATGAGAACCGAACGGAGGCTATGAACTTCATCGAGTGCGTCGAGAAGCTTCAAAAGGCGATGTACCAACTGGTTTCCGAGGATCAGCCTTCCGCGATGCTCGTTCAGGCACAGAGTCTGATGCAGATTGCTATGACGAGGCTCCAGAAAGAGTTCTATCAGATTCTTTACTTGAATCGAGCTCATCTAGATCCAAAATCAGTCACTGCTCAATCCTCTCGCTGCTCCGCCAGATCGAGCTCTTCTGATGACGATTATGACGGAACTGTAGATAACGATGTCTCTGAAGGCGAAGAAGATTCTTACATAGCTATGGCTGACTTGAGGTCAATAGCAGAGTGTATGATCTCCTGTGGTTACGGAAAAGAGTGTATAAGCATATATAAGATTATTCGGAAATCGATAGTCGATGAGGGAATTCACCATCTCGGAGTTGAGAAACAGAGTTCTTCGCAGATCAATAAAATGGACTGGGAGCTGCTTGAGGTGAAGATTAAGAACTGGTTGGATGCAGTGAAAATCGCCGTGAGAACTCTCTTCACCCGCGAGCGGATCCTCTGTGACCACGTCTTCACCGCCTCTGATTCCATCAGAGAAACTTGTTTCACTGAGATATCCAAAGAAGGCGCTTTGCTTCTCTTTCATTTCCCCGAGCTCGTTGCTGCAAAGGCCAGGAAATCGCCGGAAAGGATTTTCCGCTTGCTTGATATGTACACGACCATGGCCGAAAACTCGATGGAGATCGAAGCCATTTTTTCATTCAATTCCGTTTCTTCCGTTCCATTTCAAGCTTATAACACTCTCTTCCGACTTGGCGATTCAATTCGCACAATGGTATCGGATTTCGAGTCTTTGATTCACAAGGACTCGTCGAAATCACCAGTAGCCGGCGCTGGGGTCCACAATTTGACTCTGCAGACTATGAATTACCTCTCTCTACTTGCCGACTACAGTAACGTCCTGGCAGACATTTTCGCTGACTGGACGCTGCCGAATAAGTCATCACAGCCGGAATCTTACTTCGAATGCATCTCTTCCGATGAATCTCCGGCACCGGCGTTCTCCTTACGAGTGGCGTGGCTGATCCTCATTTTGCTCTGCAAACTCGACGGGAAGGCAAAACAGTATAAAGTCGTCTCTCTGTCGTATCTTTTCTTATCAAACAATCTCCGACACGTCACTTGTAAAGTCCGTACATCCAGCCTTCAGTATATACTTGGTGAAGAATGGATCATCAAAGAGGAGGCTAAAGTGAAGCAATTTGCAGCTAACTACGAGCGGTTAGCGTGGGGCTCGGTCATCTCATCTTTACCGGAAAATCCAACTGCCGAGATTTCTCGAGCAGAAGCTGCAGAGGTTTTCCAGAATTTCAATACCACTTTCGACCAAGCGTTTAGGACGCAGAAGATGTGTGTCGTAGCGGACTCGAAATTCCGAGACGAAATACAGATATCCATTGCATTGAAGCTAGTACCGGCTTATAGAGAATTCTGCAATGTGCATAGGAATGTGGGGCAATGTGTCCGATTTTCCCCAGAAGACGTATGTAATTACTTGTCGGACCTATTCATTACAGGGTTGGAGAGAATGTCGACGTCTTCTTCGTCATCCGGTTCTCCTTAG 1842 46.47 MRSRCFHARTSSYFISSDSNSSPKMRTSDSATSPRDHFSDSMILLEKSIEAAEPMILKWNPESSAFAKVTSMLYENRTEAMNFIECVEKLQKAMYQLVSEDQPSAMLVQAQSLMQIAMTRLQKEFYQILYLNRAHLDPKSVTAQSSRCSARSSSSDDDYDGTVDNDVSEGEEDSYIAMADLRSIAECMISCGYGKECISIYKIIRKSIVDEGIHHLGVEKQSSSQINKMDWELLEVKIKNWLDAVKIAVRTLFTRERILCDHVFTASDSIRETCFTEISKEGALLLFHFPELVAAKARKSPERIFRLLDMYTTMAENSMEIEAIFSFNSVSSVPFQAYNTLFRLGDSIRTMVSDFESLIHKDSSKSPVAGAGVHNLTLQTMNYLSLLADYSNVLADIFADWTLPNKSSQPESYFECISSDESPAPAFSLRVAWLILILLCKLDGKAKQYKVVSLSYLFLSNNLRHVTCKVRTSSLQYILGEEWIIKEEAKVKQFAANYERLAWGSVISSLPENPTAEISRAEAAEVFQNFNTTFDQAFRTQKMCVVADSKFRDEIQISIALKLVPAYREFCNVHRNVGQCVRFSPEDVCNYLSDLFITGLERMSTSSSSSGSP 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8771675 8773958 - Conep19aG0133500.1 Cone19ag1300 459737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1300 613 Pfam Exo70 exocyst complex subunit C-terminal 239 594 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone19ag1300 613 MobiDBLite consensus disorder prediction 145 168 - -
Cone19ag1300 613 SUPERFAMILY Cullin repeat-like 48 596 IPR016159 -
Cone19ag1300 613 Gene3D Exocyst complex component Exo70 66 602 - -
Cone19ag1300 613 PANTHER EXOCYST COMPLEX PROTEIN EXO70 33 596 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone19ag1300 613 Pfam Exocyst complex component Exo70 N-terminal 49 129 - -
Cone19ag1300 613 MobiDBLite consensus disorder prediction 16 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1300 K07195 - - rcu:8261785 668.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1300 Cone-Chr19:8771675 Cone20ag1348 Cone-Chr20:8666061 6.50E-86 dispersed
Cone1ag0674 Cone-Chr1:6316183 Cone19ag1300 Cone-Chr19:8771675 1.16E-191 wgd
Cone10ag0284 Cone-Chr10:1348849 Cone19ag1300 Cone-Chr19:8771675 1.30E-228 wgd
Cone11ag1101 Cone-Chr11:8582489 Cone19ag1300 Cone-Chr19:8771675 4.23E-151 wgd
Cone11ag1266 Cone-Chr11:9409923 Cone19ag1300 Cone-Chr19:8771675 4.79E-178 wgd
Cone13ag1312 Cone-Chr13:9740457 Cone19ag1300 Cone-Chr19:8771675 0 wgd
Cone18ag0321 Cone-Chr18:1595951 Cone19ag1300 Cone-Chr19:8771675 8.84E-180 wgd
Cone18ag0474 Cone-Chr18:2306911 Cone19ag1300 Cone-Chr19:8771675 4.39E-149 wgd
Cone19ag1300 Cone-Chr19:8771675 Cone3ag0313 Cone-Chr3:1592344 5.78E-225 wgd
Cone19ag1300 Cone-Chr19:8771675 Cone5ag1180 Cone-Chr5:5298449 2.91E-195 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G03540 73.8 5.4e-275 944.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G03540 73.9 1.6e-274 942.6
Cone5ag0416 . 10 649 EXO70 exocyst subunit family AT5G03540 74.8 1.3e-273 939.5
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G03540 70.9 3.6e-263 904.8
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 886.3
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G52340 80.5 3.7e-297 1017.7
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G52340 78.2 2.4e-288 988.4
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G52340 72.1 5.5e-269 924.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G52340 71.3 8.8e-267 916.8
Cone5ag0416 . 12 649 EXO70 exocyst subunit family AT5G52340 72.3 4.8e-265 911.0
Cone13ag1144 . 145 621 EXO70 exocyst subunit family AT5G52350 64.3 1.5e-175 613.6
Cone19ag1123 . 145 621 EXO70 exocyst subunit family AT5G52350 62.6 3.2e-170 595.9
Cone5ag0416 . 147 649 EXO70 exocyst subunit family AT5G52350 58.8 1.4e-165 580.5
Cone11ag0966 . 150 662 EXO70 exocyst subunit family AT5G52350 58.8 3.1e-165 579.3
Cone1ag1422 . 147 649 EXO70 exocyst subunit family AT5G52350 58.9 3.4e-164 575.9
Cone1ag0768 . 1 617 EXO70 exocyst subunit family AT5G58430 68.8 5.0e-254 874.4
Cone5ag1050 . 1 621 EXO70 exocyst subunit family AT5G58430 69.5 6.5e-254 874.0
Cone1ag0768 . 1 616 EXO70 exocyst subunit family AT1G07000 53.0 2.8e-177 619.4
Cone5ag1050 . 1 620 EXO70 exocyst subunit family AT1G07000 52.8 5.7e-175 611.7
Cone16ag1017 . 53 682 EXO70 exocyst subunit family AT5G13990 53.9 4.6e-184 642.1
Cone2ag0024 . 72 686 EXO70 exocyst subunit family AT5G13990 53.9 1.2e-179 627.5
Cone20ag1348 . 9 609 EXO70 exocyst subunit family AT1G72470 63.7 9.0e-211 730.7
Cone17ag0057 . 9 609 EXO70 exocyst subunit family AT1G72470 64.0 2.2e-209 726.1
Cone17ag0057 . 9 606 EXO70 exocyst subunit family AT1G54090 61.5 7.2e-205 711.1
Cone20ag1348 . 9 606 EXO70 exocyst subunit family AT1G54090 60.4 6.8e-203 704.5
Cone20ag1348 . 9 607 EXO70 exocyst subunit family AT3G14090 61.8 1.5e-210 729.9
Cone17ag0057 . 9 607 EXO70 exocyst subunit family AT3G14090 62.0 7.5e-210 727.6
Cone13ag0215 . 13 660 EXO70 exocyst subunit family AT5G50380 64.2 2.0e-232 802.7
Cone19ag0206 . 13 660 EXO70 exocyst subunit family AT5G50380 63.4 1.2e-229 793.5
Cone17ag1082 . 10 681 EXO70 exocyst subunit family AT4G31540 71.8 6.8e-289 990.3
Cone20ag0630 . 10 671 EXO70 exocyst subunit family AT4G31540 72.5 4.4e-288 987.6
Cone1ag0674 . 11 584 EXO70 exocyst subunit family AT3G55150 51.6 3.3e-160 562.8
Cone11ag1101 . 1 559 EXO70 exocyst subunit family AT3G55150 50.6 8.6e-153 538.1
Cone1ag0674 . 8 593 EXO70 exocyst subunit family AT2G39380 51.4 3.4e-165 579.3
Cone5ag1180 . 23 606 EXO70 exocyst subunit family AT2G39380 50.9 1.2e-162 570.9
Cone11ag1101 . 1 568 EXO70 exocyst subunit family AT2G39380 50.9 3.7e-156 549.3
Cone10ag0284 . 36 621 EXO70 exocyst subunit family AT3G09520 55.1 5.3e-179 625.2
Cone3ag0313 . 36 627 EXO70 exocyst subunit family AT3G09520 56.0 5.8e-178 621.7
Cone13ag1312 . 49 611 EXO70 exocyst subunit family AT3G09520 55.4 5.8e-170 595.1
Cone19ag1300 . 49 613 EXO70 exocyst subunit family AT3G09520 54.3 1.8e-166 583.6
Cone1ag0674 . 2 592 EXO70 exocyst subunit family AT5G59730 50.4 1.5e-160 563.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030039 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2