Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1300 ATGAGGAGTCGCTGCTTCCACGCCAGAACGTCGTCCTATTTCATCTCCAGCGATTCGAATTCATCACCGAAGATGAGAACTTCAGACTCAGCAACGTCGCCTCGTGATCATTTCTCAGATTCGATGATACTACTAGAAAAGAGCATTGAAGCGGCAGAACCGATGATTTTGAAATGGAATCCAGAATCTTCCGCCTTCGCTAAAGTTACTTCGATGTTGTATGAGAACCGAACGGAGGCTATGAACTTCATCGAGTGCGTCGAGAAGCTTCAAAAGGCGATGTACCAACTGGTTTCCGAGGATCAGCCTTCCGCGATGCTCGTTCAGGCACAGAGTCTGATGCAGATTGCTATGACGAGGCTCCAGAAAGAGTTCTATCAGATTCTTTACTTGAATCGAGCTCATCTAGATCCAAAATCAGTCACTGCTCAATCCTCTCGCTGCTCCGCCAGATCGAGCTCTTCTGATGACGATTATGACGGAACTGTAGATAACGATGTCTCTGAAGGCGAAGAAGATTCTTACATAGCTATGGCTGACTTGAGGTCAATAGCAGAGTGTATGATCTCCTGTGGTTACGGAAAAGAGTGTATAAGCATATATAAGATTATTCGGAAATCGATAGTCGATGAGGGAATTCACCATCTCGGAGTTGAGAAACAGAGTTCTTCGCAGATCAATAAAATGGACTGGGAGCTGCTTGAGGTGAAGATTAAGAACTGGTTGGATGCAGTGAAAATCGCCGTGAGAACTCTCTTCACCCGCGAGCGGATCCTCTGTGACCACGTCTTCACCGCCTCTGATTCCATCAGAGAAACTTGTTTCACTGAGATATCCAAAGAAGGCGCTTTGCTTCTCTTTCATTTCCCCGAGCTCGTTGCTGCAAAGGCCAGGAAATCGCCGGAAAGGATTTTCCGCTTGCTTGATATGTACACGACCATGGCCGAAAACTCGATGGAGATCGAAGCCATTTTTTCATTCAATTCCGTTTCTTCCGTTCCATTTCAAGCTTATAACACTCTCTTCCGACTTGGCGATTCAATTCGCACAATGGTATCGGATTTCGAGTCTTTGATTCACAAGGACTCGTCGAAATCACCAGTAGCCGGCGCTGGGGTCCACAATTTGACTCTGCAGACTATGAATTACCTCTCTCTACTTGCCGACTACAGTAACGTCCTGGCAGACATTTTCGCTGACTGGACGCTGCCGAATAAGTCATCACAGCCGGAATCTTACTTCGAATGCATCTCTTCCGATGAATCTCCGGCACCGGCGTTCTCCTTACGAGTGGCGTGGCTGATCCTCATTTTGCTCTGCAAACTCGACGGGAAGGCAAAACAGTATAAAGTCGTCTCTCTGTCGTATCTTTTCTTATCAAACAATCTCCGACACGTCACTTGTAAAGTCCGTACATCCAGCCTTCAGTATATACTTGGTGAAGAATGGATCATCAAAGAGGAGGCTAAAGTGAAGCAATTTGCAGCTAACTACGAGCGGTTAGCGTGGGGCTCGGTCATCTCATCTTTACCGGAAAATCCAACTGCCGAGATTTCTCGAGCAGAAGCTGCAGAGGTTTTCCAGAATTTCAATACCACTTTCGACCAAGCGTTTAGGACGCAGAAGATGTGTGTCGTAGCGGACTCGAAATTCCGAGACGAAATACAGATATCCATTGCATTGAAGCTAGTACCGGCTTATAGAGAATTCTGCAATGTGCATAGGAATGTGGGGCAATGTGTCCGATTTTCCCCAGAAGACGTATGTAATTACTTGTCGGACCTATTCATTACAGGGTTGGAGAGAATGTCGACGTCTTCTTCGTCATCCGGTTCTCCTTAG 1842 46.47 MRSRCFHARTSSYFISSDSNSSPKMRTSDSATSPRDHFSDSMILLEKSIEAAEPMILKWNPESSAFAKVTSMLYENRTEAMNFIECVEKLQKAMYQLVSEDQPSAMLVQAQSLMQIAMTRLQKEFYQILYLNRAHLDPKSVTAQSSRCSARSSSSDDDYDGTVDNDVSEGEEDSYIAMADLRSIAECMISCGYGKECISIYKIIRKSIVDEGIHHLGVEKQSSSQINKMDWELLEVKIKNWLDAVKIAVRTLFTRERILCDHVFTASDSIRETCFTEISKEGALLLFHFPELVAAKARKSPERIFRLLDMYTTMAENSMEIEAIFSFNSVSSVPFQAYNTLFRLGDSIRTMVSDFESLIHKDSSKSPVAGAGVHNLTLQTMNYLSLLADYSNVLADIFADWTLPNKSSQPESYFECISSDESPAPAFSLRVAWLILILLCKLDGKAKQYKVVSLSYLFLSNNLRHVTCKVRTSSLQYILGEEWIIKEEAKVKQFAANYERLAWGSVISSLPENPTAEISRAEAAEVFQNFNTTFDQAFRTQKMCVVADSKFRDEIQISIALKLVPAYREFCNVHRNVGQCVRFSPEDVCNYLSDLFITGLERMSTSSSSSGSP 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8771675 8773958 - Conep19aG0133500.1 Cone19ag1300 459737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1300 613 Pfam Exo70 exocyst complex subunit C-terminal 239 594 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone19ag1300 613 MobiDBLite consensus disorder prediction 145 168 - -
Cone19ag1300 613 SUPERFAMILY Cullin repeat-like 48 596 IPR016159 -
Cone19ag1300 613 Gene3D Exocyst complex component Exo70 66 602 - -
Cone19ag1300 613 PANTHER EXOCYST COMPLEX PROTEIN EXO70 33 596 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone19ag1300 613 Pfam Exocyst complex component Exo70 N-terminal 49 129 - -
Cone19ag1300 613 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1300 Cone-Chr19:8771675 Cone20ag1348 Cone-Chr20:8666061 6.50E-86 dispersed
Cone1ag0674 Cone-Chr1:6316183 Cone19ag1300 Cone-Chr19:8771675 1.16E-191 wgd
Cone10ag0284 Cone-Chr10:1348849 Cone19ag1300 Cone-Chr19:8771675 1.30E-228 wgd
Cone11ag1101 Cone-Chr11:8582489 Cone19ag1300 Cone-Chr19:8771675 4.23E-151 wgd
Cone11ag1266 Cone-Chr11:9409923 Cone19ag1300 Cone-Chr19:8771675 4.79E-178 wgd
Cone13ag1312 Cone-Chr13:9740457 Cone19ag1300 Cone-Chr19:8771675 0 wgd
Cone18ag0321 Cone-Chr18:1595951 Cone19ag1300 Cone-Chr19:8771675 8.84E-180 wgd
Cone18ag0474 Cone-Chr18:2306911 Cone19ag1300 Cone-Chr19:8771675 4.39E-149 wgd
Cone19ag1300 Cone-Chr19:8771675 Cone3ag0313 Cone-Chr3:1592344 5.78E-225 wgd
Cone19ag1300 Cone-Chr19:8771675 Cone5ag1180 Cone-Chr5:5298449 2.91E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1300 K07195 - rcu:8261785 668.307