Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1312 ATGTCATTTCGAATGGGAGAAGGAGATGTTTGTTTAGATGTATTAACAGATATAGCAGAGGCGAAAGAGAGCCCCCCAAGATTTGAATTGAAACGGGACCATCAGTGTCTGGTAGATGATACGGAACCCGAGCCATTTCTGAGCAAGAGGCAGGCAAAAGAAGTTTCCAATGATGACATGCGGTCAGAAGTTTCGAACCCTGTTATTTCTCCTAAAGAGAACCAGATTAGTTTTCAAGATATTTCTAGCCAACCTGCTGAGTTAGAAAACAGTAACCTACTAGAGTGTGGCGATATTACGTCTTCGTGTTCAGGGAATCTGAGTTCCTTGAGTGATGGGGAGCATCGAGAGAATGAAACGTGTCGAAATCAGAGCAAGATATCTGAGTCTGCCCAAGTCTCGAGGTTTGTTTTGGAAATTCCTAAGGAAGCTAGTTCGACTGGAATTAAAAAAATTACATTTAGGTTTAGCAAAAGAAAGGAGGACTGTAATTATCATTCACATGGGTCAGTACATCGGGCTGTAAAAGGAAGTTATGATGAGGAGCATGCACGAATGGATGATGTATATTTGGACTCATCAGCACAAATGTATAGAAAGGGCGCTCCTAATATGGAATTGAAAATGTCTAAGAAGGTTCTCCCTAACAATTATCCTACCAATGTCAAGAAACTGCTATCAACTGGGATACTAGATGGAGCCCGAGTGAAGTATATTTCTACCACAGGCAAGAGAGAGCTACAGGGAATTATAAATGGTGGTGGATATATGTGTGGATGCTCATCGTGCAATTTCTCGACTGTTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTGTCAAAACCAGACATCCAAATAATCACATATTCTTGGACAATGGGAGGCCAATTTATAGTGTCATACAAGAGATCAAGACAGCACCTCTTAGCATGTTGGATAAAGTGATCGAGGATGTGGCCGGTGCGTCTGTCAACATGGATTTGTTCGAGGCATGGAAAGAAAGTTTCCTTAAAAAAGAGAGAAGTGTTGAAGCAGAAAATAATAAGATAGGGCTTCGTGGTTCGTCCCATCCTCTTTTAAGTTGCTCCAGTGAAGCTTTGGAATCAAGCATTGGTTCTACTTCGTGTTTCATACTACCAGACAACCCTGTCGAACACCATATGCATATGGAGATGGTAGAAGAGCAGAAACATGTCAAGAAGGCAATCTCCAACATGCACAAATCAGTCACTCAACAAAAGAAAAGTACAGGAGGTGCAAAGAAAAGAGATAATGACCTGCACCGGTTGCTTTTCATGCCAAATGGACTTCCCGATGGAGCCGAGCTTGCATACTTTGTCAAAGGACATAGAATACTTGGAGGCTACAAGCAGGGAAATGGTATAGTCTGTAGTCACTGTGACAGAGAGGTCAGCCCTTCCCAGTTTGAAGCTCATGCCGGAATGGCTGCCAGGCGTCAACCGTATCGTCACATTTATACATCTAATGGACTCACGCTGCATGATATAGCTATTTCATTGGCAAGTGGACAAAGCCTTACTACTGGAGACAGTGATGATATGTGTTCAGCATGTGGAGATGGAGGAAATTTGATCTGTTGTGATCAATGCCCTCGGGCTTTCCATGCAGCTTGCTTGCAGTTGGAGTGTAATCCTGAAGGTAATTGGTGTTGCCCAAATTGTAAAGACAAAGTAGGTCCTAGTAGGAAAACTGTTGTTGGGGGAACTACAACTCTCACAAAACCAATTTTAATAAGGTTGACACGAGTTGTCCGAGCACCGGAGTTCGAAATTGGTGGTTGCGTTGTTTGCAGGGGGCCCGACTTCAGTGTTGCTAAATTTGATGAGCGAACAGTCATACTTTGCGACCAATGTGAGAGGGAGTTCCACGTAGGCTGTTTGCGGAATAGTGGGTTGTGTGATTTAAAAGAGCTTCCCAAGGATAAGTGGTTTTGCTGTGAGGACTGCAATCGGATTCATGTGGCACTACAGAATGCTGTTTCAAATGGAGCTGAGCTCATTCCTGATCCATTATCAAATATCATAGTCAGGAAGCATGCTGCTAAAGGACTATGTATTGATGAAGCAGATAAAGATGTTAGATGGCGAATTTTAAGTGGTAAAAGTCGTTATCCGGAAGACCTCCCATTGCTTTCAAGGACTGCAGCAATTTTTCGAGAGTGTTTTGATCCTATTGTTGCAAAATCTGGTCGTGATCTCATTCCAGTTATGGTGTATGGAAGAAACATCTCTGGGCAAGAGTTTGGAGGGATGTATTGTGTCGTCTTAACTGTGAGGTCTGTCGTTGTATCAGCTGCTCTTCTTAGAATTTTCGGTCGGGGAGTAGCCGAGCTTCCCATAGTGGCCACAAGTAGGGATTATCAAGGAAAGGGTTATTTTCAAGCACTGTTCTATTGCATTGAGGGACTACTTTGTTCCCTAAACGTGGAAAACCTGGTCCTTCCTGCAGCTGAGGAAGCTGAATCAATTTGGACCAAGAAACTCGGTTTCAAAAGGATGAGCGAAGAACAATTGAAGAAATATATGAGAGAGGTTCAGCTGACAATTTTCAAAGGAACATCCATGCTGGAGAAGGCGGTGCCGAAGATGGAAGATTGA 2619 43.15 MSFRMGEGDVCLDVLTDIAEAKESPPRFELKRDHQCLVDDTEPEPFLSKRQAKEVSNDDMRSEVSNPVISPKENQISFQDISSQPAELENSNLLECGDITSSCSGNLSSLSDGEHRENETCRNQSKISESAQVSRFVLEIPKEASSTGIKKITFRFSKRKEDCNYHSHGSVHRAVKGSYDEEHARMDDVYLDSSAQMYRKGAPNMELKMSKKVLPNNYPTNVKKLLSTGILDGARVKYISTTGKRELQGIINGGGYMCGCSSCNFSTVLSAYEFEQHAGVKTRHPNNHIFLDNGRPIYSVIQEIKTAPLSMLDKVIEDVAGASVNMDLFEAWKESFLKKERSVEAENNKIGLRGSSHPLLSCSSEALESSIGSTSCFILPDNPVEHHMHMEMVEEQKHVKKAISNMHKSVTQQKKSTGGAKKRDNDLHRLLFMPNGLPDGAELAYFVKGHRILGGYKQGNGIVCSHCDREVSPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLASGQSLTTGDSDDMCSACGDGGNLICCDQCPRAFHAACLQLECNPEGNWCCPNCKDKVGPSRKTVVGGTTTLTKPILIRLTRVVRAPEFEIGGCVVCRGPDFSVAKFDERTVILCDQCEREFHVGCLRNSGLCDLKELPKDKWFCCEDCNRIHVALQNAVSNGAELIPDPLSNIIVRKHAAKGLCIDEADKDVRWRILSGKSRYPEDLPLLSRTAAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLTVRSVVVSAALLRIFGRGVAELPIVATSRDYQGKGYFQALFYCIEGLLCSLNVENLVLPAAEEAESIWTKKLGFKRMSEEQLKKYMREVQLTIFKGTSMLEKAVPKMED 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8830190 8835820 - Conep19aG0134700.1 Cone19ag1312 459749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1312 872 SUPERFAMILY FYVE/PHD zinc finger 517 568 IPR011011 -
Cone19ag1312 872 CDD PHD1_AIRE 521 561 - -
Cone19ag1312 872 Gene3D - 702 868 - -
Cone19ag1312 872 SUPERFAMILY FYVE/PHD zinc finger 600 654 IPR011011 -
Cone19ag1312 872 SMART PHD_3 600 657 IPR001965 -
Cone19ag1312 872 SMART PHD_3 521 562 IPR001965 -
Cone19ag1312 872 MobiDBLite consensus disorder prediction 33 73 - -
Cone19ag1312 872 ProSiteProfiles Zinc finger PHD-type profile. 598 659 IPR019787 -
Cone19ag1312 872 FunFam PHD zinc finger protein 599 659 - -
Cone19ag1312 872 PANTHER AUTOIMMUNE REGULATOR 50 869 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone19ag1312 872 ProSitePatterns Zinc finger PHD-type signature. 601 656 IPR019786 -
Cone19ag1312 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 659 IPR013083 -
Cone19ag1312 872 FunFam PHD finger family protein 699 866 - -
Cone19ag1312 872 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 751 844 IPR016181 -
Cone19ag1312 872 MobiDBLite consensus disorder prediction 107 126 - -
Cone19ag1312 872 Pfam Tify domain binding domain 249 303 IPR032308 -
Cone19ag1312 872 Pfam Tify domain binding domain 455 504 IPR032308 -
Cone19ag1312 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 581 IPR013083 -
Cone19ag1312 872 ProSitePatterns Zinc finger PHD-type signature. 522 561 IPR019786 -
Cone19ag1312 872 MobiDBLite consensus disorder prediction 33 60 - -
Cone19ag1312 872 ProSiteProfiles Zinc finger PHD-type profile. 519 564 IPR019787 -
Cone19ag1312 872 Pfam PHD-finger 522 561 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1235 Cone-Chr13:9451966 Cone19ag1312 Cone-Chr19:8830190 1.22E-161 dispersed
Cone19ag1312 Cone-Chr19:8830190 Cone5ag1271 Cone-Chr5:6081321 3.41E-170 dispersed
Cone1ag1303 Cone-Chr1:56307972 Cone19ag1312 Cone-Chr19:8830190 1.01E-40 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone19ag1312 Cone-Chr19:8830190 0 wgd
Cone19ag1312 Cone-Chr19:8830190 Cone5ag0283 Cone-Chr5:1205653 5.02E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1312 - - - 0.0