Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1312 ATGTCATTTCGAATGGGAGAAGGAGATGTTTGTTTAGATGTATTAACAGATATAGCAGAGGCGAAAGAGAGCCCCCCAAGATTTGAATTGAAACGGGACCATCAGTGTCTGGTAGATGATACGGAACCCGAGCCATTTCTGAGCAAGAGGCAGGCAAAAGAAGTTTCCAATGATGACATGCGGTCAGAAGTTTCGAACCCTGTTATTTCTCCTAAAGAGAACCAGATTAGTTTTCAAGATATTTCTAGCCAACCTGCTGAGTTAGAAAACAGTAACCTACTAGAGTGTGGCGATATTACGTCTTCGTGTTCAGGGAATCTGAGTTCCTTGAGTGATGGGGAGCATCGAGAGAATGAAACGTGTCGAAATCAGAGCAAGATATCTGAGTCTGCCCAAGTCTCGAGGTTTGTTTTGGAAATTCCTAAGGAAGCTAGTTCGACTGGAATTAAAAAAATTACATTTAGGTTTAGCAAAAGAAAGGAGGACTGTAATTATCATTCACATGGGTCAGTACATCGGGCTGTAAAAGGAAGTTATGATGAGGAGCATGCACGAATGGATGATGTATATTTGGACTCATCAGCACAAATGTATAGAAAGGGCGCTCCTAATATGGAATTGAAAATGTCTAAGAAGGTTCTCCCTAACAATTATCCTACCAATGTCAAGAAACTGCTATCAACTGGGATACTAGATGGAGCCCGAGTGAAGTATATTTCTACCACAGGCAAGAGAGAGCTACAGGGAATTATAAATGGTGGTGGATATATGTGTGGATGCTCATCGTGCAATTTCTCGACTGTTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTGTCAAAACCAGACATCCAAATAATCACATATTCTTGGACAATGGGAGGCCAATTTATAGTGTCATACAAGAGATCAAGACAGCACCTCTTAGCATGTTGGATAAAGTGATCGAGGATGTGGCCGGTGCGTCTGTCAACATGGATTTGTTCGAGGCATGGAAAGAAAGTTTCCTTAAAAAAGAGAGAAGTGTTGAAGCAGAAAATAATAAGATAGGGCTTCGTGGTTCGTCCCATCCTCTTTTAAGTTGCTCCAGTGAAGCTTTGGAATCAAGCATTGGTTCTACTTCGTGTTTCATACTACCAGACAACCCTGTCGAACACCATATGCATATGGAGATGGTAGAAGAGCAGAAACATGTCAAGAAGGCAATCTCCAACATGCACAAATCAGTCACTCAACAAAAGAAAAGTACAGGAGGTGCAAAGAAAAGAGATAATGACCTGCACCGGTTGCTTTTCATGCCAAATGGACTTCCCGATGGAGCCGAGCTTGCATACTTTGTCAAAGGACATAGAATACTTGGAGGCTACAAGCAGGGAAATGGTATAGTCTGTAGTCACTGTGACAGAGAGGTCAGCCCTTCCCAGTTTGAAGCTCATGCCGGAATGGCTGCCAGGCGTCAACCGTATCGTCACATTTATACATCTAATGGACTCACGCTGCATGATATAGCTATTTCATTGGCAAGTGGACAAAGCCTTACTACTGGAGACAGTGATGATATGTGTTCAGCATGTGGAGATGGAGGAAATTTGATCTGTTGTGATCAATGCCCTCGGGCTTTCCATGCAGCTTGCTTGCAGTTGGAGTGTAATCCTGAAGGTAATTGGTGTTGCCCAAATTGTAAAGACAAAGTAGGTCCTAGTAGGAAAACTGTTGTTGGGGGAACTACAACTCTCACAAAACCAATTTTAATAAGGTTGACACGAGTTGTCCGAGCACCGGAGTTCGAAATTGGTGGTTGCGTTGTTTGCAGGGGGCCCGACTTCAGTGTTGCTAAATTTGATGAGCGAACAGTCATACTTTGCGACCAATGTGAGAGGGAGTTCCACGTAGGCTGTTTGCGGAATAGTGGGTTGTGTGATTTAAAAGAGCTTCCCAAGGATAAGTGGTTTTGCTGTGAGGACTGCAATCGGATTCATGTGGCACTACAGAATGCTGTTTCAAATGGAGCTGAGCTCATTCCTGATCCATTATCAAATATCATAGTCAGGAAGCATGCTGCTAAAGGACTATGTATTGATGAAGCAGATAAAGATGTTAGATGGCGAATTTTAAGTGGTAAAAGTCGTTATCCGGAAGACCTCCCATTGCTTTCAAGGACTGCAGCAATTTTTCGAGAGTGTTTTGATCCTATTGTTGCAAAATCTGGTCGTGATCTCATTCCAGTTATGGTGTATGGAAGAAACATCTCTGGGCAAGAGTTTGGAGGGATGTATTGTGTCGTCTTAACTGTGAGGTCTGTCGTTGTATCAGCTGCTCTTCTTAGAATTTTCGGTCGGGGAGTAGCCGAGCTTCCCATAGTGGCCACAAGTAGGGATTATCAAGGAAAGGGTTATTTTCAAGCACTGTTCTATTGCATTGAGGGACTACTTTGTTCCCTAAACGTGGAAAACCTGGTCCTTCCTGCAGCTGAGGAAGCTGAATCAATTTGGACCAAGAAACTCGGTTTCAAAAGGATGAGCGAAGAACAATTGAAGAAATATATGAGAGAGGTTCAGCTGACAATTTTCAAAGGAACATCCATGCTGGAGAAGGCGGTGCCGAAGATGGAAGATTGA 2619 43.15 MSFRMGEGDVCLDVLTDIAEAKESPPRFELKRDHQCLVDDTEPEPFLSKRQAKEVSNDDMRSEVSNPVISPKENQISFQDISSQPAELENSNLLECGDITSSCSGNLSSLSDGEHRENETCRNQSKISESAQVSRFVLEIPKEASSTGIKKITFRFSKRKEDCNYHSHGSVHRAVKGSYDEEHARMDDVYLDSSAQMYRKGAPNMELKMSKKVLPNNYPTNVKKLLSTGILDGARVKYISTTGKRELQGIINGGGYMCGCSSCNFSTVLSAYEFEQHAGVKTRHPNNHIFLDNGRPIYSVIQEIKTAPLSMLDKVIEDVAGASVNMDLFEAWKESFLKKERSVEAENNKIGLRGSSHPLLSCSSEALESSIGSTSCFILPDNPVEHHMHMEMVEEQKHVKKAISNMHKSVTQQKKSTGGAKKRDNDLHRLLFMPNGLPDGAELAYFVKGHRILGGYKQGNGIVCSHCDREVSPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLASGQSLTTGDSDDMCSACGDGGNLICCDQCPRAFHAACLQLECNPEGNWCCPNCKDKVGPSRKTVVGGTTTLTKPILIRLTRVVRAPEFEIGGCVVCRGPDFSVAKFDERTVILCDQCEREFHVGCLRNSGLCDLKELPKDKWFCCEDCNRIHVALQNAVSNGAELIPDPLSNIIVRKHAAKGLCIDEADKDVRWRILSGKSRYPEDLPLLSRTAAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLTVRSVVVSAALLRIFGRGVAELPIVATSRDYQGKGYFQALFYCIEGLLCSLNVENLVLPAAEEAESIWTKKLGFKRMSEEQLKKYMREVQLTIFKGTSMLEKAVPKMED 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8830190 8835820 - Conep19aG0134700.1 Cone19ag1312 459749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1312 872 SUPERFAMILY FYVE/PHD zinc finger 517 568 IPR011011 -
Cone19ag1312 872 CDD PHD1_AIRE 521 561 - -
Cone19ag1312 872 Gene3D - 702 868 - -
Cone19ag1312 872 SUPERFAMILY FYVE/PHD zinc finger 600 654 IPR011011 -
Cone19ag1312 872 SMART PHD_3 600 657 IPR001965 -
Cone19ag1312 872 SMART PHD_3 521 562 IPR001965 -
Cone19ag1312 872 MobiDBLite consensus disorder prediction 33 73 - -
Cone19ag1312 872 ProSiteProfiles Zinc finger PHD-type profile. 598 659 IPR019787 -
Cone19ag1312 872 FunFam PHD zinc finger protein 599 659 - -
Cone19ag1312 872 PANTHER AUTOIMMUNE REGULATOR 50 869 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone19ag1312 872 ProSitePatterns Zinc finger PHD-type signature. 601 656 IPR019786 -
Cone19ag1312 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 659 IPR013083 -
Cone19ag1312 872 FunFam PHD finger family protein 699 866 - -
Cone19ag1312 872 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 751 844 IPR016181 -
Cone19ag1312 872 MobiDBLite consensus disorder prediction 107 126 - -
Cone19ag1312 872 Pfam Tify domain binding domain 249 303 IPR032308 -
Cone19ag1312 872 Pfam Tify domain binding domain 455 504 IPR032308 -
Cone19ag1312 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 581 IPR013083 -
Cone19ag1312 872 ProSitePatterns Zinc finger PHD-type signature. 522 561 IPR019786 -
Cone19ag1312 872 MobiDBLite consensus disorder prediction 33 60 - -
Cone19ag1312 872 ProSiteProfiles Zinc finger PHD-type profile. 519 564 IPR019787 -
Cone19ag1312 872 Pfam PHD-finger 522 561 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1312 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1235 Cone-Chr13:9451966 Cone19ag1312 Cone-Chr19:8830190 1.22E-161 dispersed
Cone19ag1312 Cone-Chr19:8830190 Cone5ag1271 Cone-Chr5:6081321 3.41E-170 dispersed
Cone1ag1303 Cone-Chr1:56307972 Cone19ag1312 Cone-Chr19:8830190 1.01E-40 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone19ag1312 Cone-Chr19:8830190 0 wgd
Cone19ag1312 Cone-Chr19:8830190 Cone5ag0283 Cone-Chr5:1205653 5.02E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag1235 . 158 939 PHD Transcription Factor Family AT2G36720 50.8 5.0e-224 775.4
Cone19ag1312 . 5 872 PHD Transcription Factor Family AT3G53680 56.5 2.2e-265 912.5
Cone13ag1327 . 1 864 PHD Transcription Factor Family AT3G53680 55.0 3.3e-261 898.7
Cone3ag0322 . 378 507 PHD Transcription Factor Family AT3G53680 56.2 2.6e-40 164.9
Cone5ag0283 . 418 547 PHD Transcription Factor Family AT3G53680 52.3 2.3e-36 151.8
Cone19ag0716 . 11 651 PHD Transcription Factor Family AT5G22260 51.6 1.1e-185 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40