Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1357 ATGGCTGAAGAGGGTTTTGAGGGATACCATATTCCACAACAGAGCAGAAGAGAGAAGCTCAGAGAGGTTGGTTCAGCTCAAAACCACCCTCCTTGTGTACAAACTCAAACTAGTGATCATCATCATCTGCTACTGCCTCTCTATGATCCGACGTCGTATATCTCCACTACCGAGTTGACTCGCGAGTTTCATCATAATCATCATCACCAACACCGATCCGACTCACTCACGAGTCCAGACGAGTCATGTAAAACCAGACACCACCCGGCAGGCTGTAGTAATATTGTGAAAGAGGAAGGCGTTAATTTGATGGGATTTATGGGAGGAAGCTGCCTCATTAATAATAGTAGTAATACTACTGCTTCTTCCTCTACTTCACCTGATCAATTACAACATCATCCTTACAATTACTTGGATCCAAGATCTTCTGCTAATCTGCCATTAAACCCTACCTCTATTCACGATGTTAACAATAGCCCTTTTATTTTCTCCCCACAAACCCTTCAGAATCTCGACCATAGTACCTACAATGGGGTTCACGACCAACTGGTCGTGTTCAGACCGGAAACACTGTCGCTCTCCCTCTCTTCTTCCTCTCATCCTTTCGACCTCAACCTTCAAAAGTACGGCTCTGCTATTTACAGCACCCCGCCGCACGACGACATTGTTCTCGCGTCGGCCACTAATGTCGGTCCATTTACAGCTTACGTTTCGGTTTTGAAAGGGTCGAGATTTTTTAAACCTGCTCAACAGTTGTTAGAGGAATTATGTGATGTTGGCATTCATGGAATCTACTCCGAGAAGATCGTGCTGGATTCTAGTTTAATCGATCCACCATTGGAGACCTTCAGCTCGTGTGCTGGTCATGGGATTGTTGATGATGGAGGTGAAAACGGAAGGAAGAAATCTAGGCTAATTTCCATGCTTGATGAGGTTTACACAAAGTATAAGCAATACTGTCAACAGATTCAGGCAATAGTGGCATCGTTCGAGTACGTTTCCGGCCTTGGAAATGCAGCACTCTATGCTTACTTGGCCGTAAAGACCATGAGTAAGCAGTTCAGATGCTTGAAGAATGCGATCACAGAGCAGCTTCAGTTCCCCAATAAGGCATCGGGTCAACAATATCAACGGTCTCTTCACAACACTGGATTCCTCGAGCACCAACCTGTCTGGAGACCTCAGAGGGGTCTTCCTGAACGTGCCGTGTCCGTTCTCAGGGCATGGTTGTTTGAGCACTTTCTCCATCCTTATCCTACGGACACTGACAAACTTCTGTTGGCTAAACAAACTGGTTTGTCAAGAAATCAGGTGTCTAATTGGTTTATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATACACATGCTCGAAACCCGCCAAGCAGAAAAATCGACACACAGGCCGGACGAGCTATTAAATACAGACTTATCAAACAACGTTAATGGTACTCCCCCTTCAGCTGTTTCACTCGCTTCAGAATATCTACACTCCGGATCAAAACGGCATATTCTTCAAGACACTAGAAACCAAAATCATCATCATCATCATCACGATATGACATCAAACGTATCAAGTCAATCTGATGTTGGTGTTCGCACAACAAGCACGGCGAGTAGGGGTGCTGGTAATGGCAGTGGAGTTTCACTGACGCTCGGTCTTCACCAGAATAACAGTGCGATGGGTCTTTCCGAGCCATTACCGATACATGCAGCAGGTCAAAGTTTCGGCCTCGACATGAATGGAGATCATCATCATCATGCAGGAGGGTATAATATAATGAACGGATTCGAATTGCAGAATCGACATTTTGGACGGAATCTTGGTGGAGGGCAACTCTTACATGATTTTGTTGGGTGA 1869 45.32 MAEEGFEGYHIPQQSRREKLREVGSAQNHPPCVQTQTSDHHHLLLPLYDPTSYISTTELTREFHHNHHHQHRSDSLTSPDESCKTRHHPAGCSNIVKEEGVNLMGFMGGSCLINNSSNTTASSSTSPDQLQHHPYNYLDPRSSANLPLNPTSIHDVNNSPFIFSPQTLQNLDHSTYNGVHDQLVVFRPETLSLSLSSSSHPFDLNLQKYGSAIYSTPPHDDIVLASATNVGPFTAYVSVLKGSRFFKPAQQLLEELCDVGIHGIYSEKIVLDSSLIDPPLETFSSCAGHGIVDDGGENGRKKSRLISMLDEVYTKYKQYCQQIQAIVASFEYVSGLGNAALYAYLAVKTMSKQFRCLKNAITEQLQFPNKASGQQYQRSLHNTGFLEHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLLLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLETRQAEKSTHRPDELLNTDLSNNVNGTPPSAVSLASEYLHSGSKRHILQDTRNQNHHHHHHDMTSNVSSQSDVGVRTTSTASRGAGNGSGVSLTLGLHQNNSAMGLSEPLPIHAAGQSFGLDMNGDHHHHAGGYNIMNGFELQNRHFGRNLGGGQLLHDFVG 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9008974 9012272 - Conep19aG0139300.1 Cone19ag1357 459794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1357 622 FunFam BEL1-like homeodomain protein 9 395 457 - -
Cone19ag1357 622 MobiDBLite consensus disorder prediction 64 88 - -
Cone19ag1357 622 MobiDBLite consensus disorder prediction 475 492 - -
Cone19ag1357 622 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone19ag1357 622 MobiDBLite consensus disorder prediction 513 548 - -
Cone19ag1357 622 MobiDBLite consensus disorder prediction 1 39 - -
Cone19ag1357 622 CDD homeodomain 392 453 IPR001356 GO:0003677(InterPro)
Cone19ag1357 622 SUPERFAMILY Homeodomain-like 394 458 IPR009057 -
Cone19ag1357 622 Gene3D - 395 457 - -
Cone19ag1357 622 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677(InterPro)
Cone19ag1357 622 MobiDBLite consensus disorder prediction 1 24 - -
Cone19ag1357 622 Pfam Associated with HOX 239 362 IPR006563 -
Cone19ag1357 622 SMART HOX_1 392 456 IPR001356 GO:0003677(InterPro)
Cone19ag1357 622 MobiDBLite consensus disorder prediction 463 492 - -
Cone19ag1357 622 MobiDBLite consensus disorder prediction 72 88 - -
Cone19ag1357 622 SMART prehox3 234 363 IPR006563 -
Cone19ag1357 622 MobiDBLite consensus disorder prediction 526 548 - -
Cone19ag1357 622 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 150 509 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1357 Cone-Chr19:9008974 Cone3ag0138 Cone-Chr3:763964 9.19E-65 dispersed
Cone10ag0342 Cone-Chr10:1625091 Cone19ag1357 Cone-Chr19:9008974 1.43E-121 wgd
Cone13ag1363 Cone-Chr13:9972758 Cone19ag1357 Cone-Chr19:9008974 0 wgd
Cone19ag1357 Cone-Chr19:9008974 Cone3ag0372 Cone-Chr3:1878156 8.07E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45382 PF00962 A_deaminase 3.70E-127 CL0034 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1357 - - - 0.0