Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone19ag1368 | ATGCCAGGCCATGTCGATTTGGAGCAAGGGGTTCATCAGCATTCCGGCACCGGAAGCGACATCAACTCCGTCGACGACGGCGAGGGTTCGTGCTACTCTCAGTTTTACTCAGCTAACGGTGGGTCCTACGACGAGTACAGGCTTGCTTCGGATTCAAGGAGACTTTCTTTGGGTTCATCGGAGGATGGTACAGTGGAGGCGGTGGTGGAGATTGAAAATGAGGTTTCGGAAGTGAAGGTGCATTTAGGTAAAGTGGCGGCGGAGAGGGACTGCAGAATTTGTCATCTGGGTTTGGAGAGTAATAGCCATGAATCTGGAGTTGCAATTGAATTGGGTTGTTCATGCAAAGAGGATTTAGCTGCTGCTCACAAGCATTGTGCTGAGGCATGGTTTAAGATTAAGGGCAATAAGACATGCGAGATATGTCATTCCGTAGCAAGGAATATTCTTGGAGCACATGAACTAGAGCTAATCGAACAATCCGTCGAGTCCAACAACACCTCAACAACTGCAACAACGACGACAGCCACAGCGCCTGCCCCACCATTGGAGACTCGGAGCTTCTGGCGGGGCCAACGCTTCTTGAACTTCCTTCTTGCTTGCATGGTATTTGCTTTCGTCATATCATGGCTCTTCCACTTTAATGTTCCATCATAA | 657 | 49.16 | MPGHVDLEQGVHQHSGTGSDINSVDDGEGSCYSQFYSANGGSYDEYRLASDSRRLSLGSSEDGTVEAVVEIENEVSEVKVHLGKVAAERDCRICHLGLESNSHESGVAIELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICHSVARNILGAHELELIEQSVESNNTSTTATTTTATAPAPPLETRSFWRGQRFLNFLLACMVFAFVISWLFHFNVPS | 218 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 9052368 | 9054410 | - | Conep19aG0140500.1 | Cone19ag1368 | 459805 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone19ag1368 | 218 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 150 | IPR013083 | - | |
| Cone19ag1368 | 218 | PANTHER | ZINC FINGER, RING-CH-TYPE | 22 | 217 | - | - | |
| Cone19ag1368 | 218 | SUPERFAMILY | RING/U-box | 88 | 146 | - | - | |
| Cone19ag1368 | 218 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 83 | 149 | IPR011016 | GO:0008270(InterPro) | |
| Cone19ag1368 | 218 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cone19ag1368 | 218 | SMART | ringv_2 | 90 | 143 | IPR011016 | GO:0008270(InterPro) | |
| Cone19ag1368 | 218 | Pfam | RING-variant domain | 91 | 142 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag1368 | Cone-Chr19:9052368 | Cone1ag0217 | Cone-Chr1:1322891 | 1.22E-27 | dispersed | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone19ag1368 | Cone-Chr19:9052368 | 5.26E-64 | wgd | |
| Cone10ag0353 | Cone-Chr10:1675430 | Cone19ag1368 | Cone-Chr19:9052368 | 3.17E-35 | wgd | |
| Cone13ag1373 | Cone-Chr13:10010431 | Cone19ag1368 | Cone-Chr19:9052368 | 3.86E-132 | wgd | |
| Cone19ag1368 | Cone-Chr19:9052368 | Cone3ag0384 | Cone-Chr3:1932798 | 1.89E-63 | wgd | |
| Cone19ag1368 | Cone-Chr19:9052368 | Cone5ag0225 | Cone-Chr5:957190 | 4.67E-65 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone19ag1368 | - | - | - | 0.0 |