Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1373 ATGATTGTTTCCATGGACTTGAATGCCTCACCAGTACCTGAAGAGGATGAAGAGACTTTTGAAAGGCATATGGATGAGTACAATGCTAGAGATGAACGAATAGAAACAGGAGCTGATATAGCACGGCGGGAACGAGATGAGAGGCGTAAAAGAATGAGAAGAGAACGCCCTGACGAGAGACCAGTATTTGTATCTCAACCACTCACTTACGATGATTTCTATCCAACAAAGAAGCCCAATGATAGAAACAAGCTCCCTCCAGGTTGGTTGGATTGTCCTGCATTTGGTCAGGAAATATGTTGCATGATTCCTTCTAAGGTTCCTCTTGATGAGACATTCAATGAACATATTGTCCCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAACAGAGAGTTTTAGGGAGAAAGCTTGGTTTGGTGATAGACTTGACAAATACCACTCGTTACTATACCCATTCAGAATTCAGGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAAGGGAGGGACTCTGTTCCTGACAATCCTTCTGTAAATAAGTTTGTGTATGAGGTCACTCAGTTTCTCTCACGTCAAAAACACTCAAAGAAGTATATCCTTGTCCATTGCACGCACGGGCATAATCGCACAGGATATATGATTGTTCATTATCTTATGCGATCCCAGTCAATTTCTGTGACCCAGGCCATAAGAATATTTTCCGATGCGCGTCCTCCTGGAATCTACAAGCCTGACTACATTGATGCACTATATGCCTTTTATCACGAAAGAAAACCTGAAGCAGTTGTTTGCCCGCCAACTCCAGAGTGGAAGAGATCTTCTGATCTTGATCTCAATGGTGAAGCAGTGCCAGATGATGACGATGATGGAGGTTCTGCTGCTCCTGTTCATCCTTCCCAGGAGAATCACGAAGCAGACGTGGTTATGACAAATGATGATGTTTTGGGAGATGATATTCCTGATGATCAGCGAGAAGCTTTCCGACTCTTTTGTTATCAAATGCTTAAGTTGGGGACTGGGGTAAGAGGAAACTCTCAATTCCCTGGGTCACACCCGGTTTCTCTCAACAGGGACAACTTACAACTGTTAAGGCAGCGGTATTATTATGCGACATGGAAAGCTGATGGAACTCGTTATATGATGCTAATAACCATGGATGGATGTTACTTGGTCGATAGAACTTTCAACTTCCGAAGGGTGCAAATGAGGTTCCCCTGCAGAAATACTAATGATGGTCTAGGTGAGAAGACTCACCACTACACATTGCTTGATGGGGAGATGATAATAGATAATCTGCCCGACTCGAACAAGCAAGAAAGAAGATATCTGATATATGACATGATGGCAATCAACTCTGTCTCTATCATTGAGCGGCCTTTCTGTGAACGGTGGAAAATGCTCGAGAAAGAAGTGATTGAACCTAGAAACATTGAGCGCCACAATATTTACCAGAGTAGGAATCCTCATTATAGATATGATCTGGAGCCATTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTGCAGTTCCCAAGGTTTTAAAGGAATTCATCCCCCGGCTTTCACATGATGCAGATGGTCTAATATTCCAGGGATGGGATGATCCTTATGTTCCCCGCACACATGAAGGTCTTCTGAAGTGGAAATATCCTGAAATGAACTCAGTTGACTTTTTATTCGAGGTAACCGATGATGATCGTCAGCTACTATTTCTTCATGAACGAGGAAAGAAAAAATTAATGGACGGAAATAAAGTTGTATTCAAAGACGGTTCGGATCCCTCTTTCCATTCGGGGAAGATTATTGAGTGCTCTTGGGGTGCTGAAGAACAAGAATGGGTTTACATGCGAGGGAGGCTAGACAAATTTACACCCAATGAATTTAATACTTATAAAAAGGTGATGCGAAGCATAAGAGACAATATCACAGAGGACATTTTGTTAGGTGAGATTCATGAGATTATTTGCTTGCCTATGTATGCTGATCGGATAAGGAACGATAGCAAGGCTCACCAGCATACAAATAATTCAGCACGGCGTAAGTAA 2055 42.24 MIVSMDLNASPVPEEDEETFERHMDEYNARDERIETGADIARRERDERRKRMRRERPDERPVFVSQPLTYDDFYPTKKPNDRNKLPPGWLDCPAFGQEICCMIPSKVPLDETFNEHIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYTHSEFRKEGIKHVKIQCKGRDSVPDNPSVNKFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHYLMRSQSISVTQAIRIFSDARPPGIYKPDYIDALYAFYHERKPEAVVCPPTPEWKRSSDLDLNGEAVPDDDDDGGSAAPVHPSQENHEADVVMTNDDVLGDDIPDDQREAFRLFCYQMLKLGTGVRGNSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLVDRTFNFRRVQMRFPCRNTNDGLGEKTHHYTLLDGEMIIDNLPDSNKQERRYLIYDMMAINSVSIIERPFCERWKMLEKEVIEPRNIERHNIYQSRNPHYRYDLEPFRVRRKDFWLLSAVPKVLKEFIPRLSHDADGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVTDDDRQLLFLHERGKKKLMDGNKVVFKDGSDPSFHSGKIIECSWGAEEQEWVYMRGRLDKFTPNEFNTYKKVMRSIRDNITEDILLGEIHEIICLPMYADRIRNDSKAHQHTNNSARRK 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9078101 9085037 + Conep19aG0141000.1 Cone19ag1373 459810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1373 684 PANTHER MRNA-CAPPING ENZYME 77 651 IPR051029 GO:0004484(PANTHER)|GO:0006370(PANTHER)
Cone19ag1373 684 Pfam Dual specificity phosphatase, catalytic domain 137 257 IPR000340 GO:0016311(InterPro)
Cone19ag1373 684 MobiDBLite consensus disorder prediction 15 61 - -
Cone19ag1373 684 SMART dsp_5 119 259 IPR020422 GO:0006470(InterPro)
Cone19ag1373 684 PIRSF mRNA_capping_HCE 74 684 IPR017074 GO:0004484(InterPro)|GO:0006370(InterPro)|GO:0140818(InterPro)
Cone19ag1373 684 SUPERFAMILY Nucleic acid-binding proteins 555 668 IPR012340 -
Cone19ag1373 684 Gene3D DNA ligase/mRNA capping enzyme 313 552 - -
Cone19ag1373 684 MobiDBLite consensus disorder prediction 277 310 - -
Cone19ag1373 684 FunFam mRNA capping enzyme family protein 81 295 - -
Cone19ag1373 684 Gene3D Protein tyrosine phosphatase superfamily 81 293 IPR029021 -
Cone19ag1373 684 CDD Adenylation_mRNA_capping 325 553 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cone19ag1373 684 ProSiteProfiles Dual specificity protein phosphatase domain profile. 107 263 IPR020422 GO:0006470(InterPro)
Cone19ag1373 684 FunFam mRNA capping enzyme, putative 313 550 - -
Cone19ag1373 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 204 214 IPR016130 GO:0016311(InterPro)
Cone19ag1373 684 MobiDBLite consensus disorder prediction 1 61 - -
Cone19ag1373 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 274 IPR029021 -
Cone19ag1373 684 Gene3D - 553 645 IPR012340 -
Cone19ag1373 684 FunFam mRNA capping enzyme family protein 551 660 - -
Cone19ag1373 684 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484(InterPro)|GO:0005524(InterPro)|GO:0006370(InterPro)
Cone19ag1373 684 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 553 - -
Cone19ag1373 684 Pfam mRNA capping enzyme, C-terminal domain 591 651 IPR013846 -
Cone19ag1373 684 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 182 251 IPR000387 GO:0016311(InterPro)
Cone19ag1373 684 CDD RNA_5'-triphosphatase 88 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1373 K13917 - - gmx:100776633 1088.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1383 Cone-Chr13:10039588 Cone19ag1373 Cone-Chr19:9078101 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone20ag0690 . 24 264 Protein tyrosine phosphatase (PTP) family AT1G71860 63.9 2.6e-87 319.7
Cone13ag0255 . 22 932 Protein tyrosine phosphatase (PTP) family AT5G23720 63.5 0.0e+00 1077.0
Cone14ag0823 . 33 172 Protein tyrosine phosphatase (PTP) family AT3G06110 59.3 4.5e-45 178.3
Cone12ag1514 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 79.3 2.5e-73 272.3
Cone8ag1559 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 7.9e-72 267.3
Cone5ag0384 . 90 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.7 1.3e-116 416.8
Cone1ag1393 . 90 371 Protein tyrosine phosphatase (PTP) family AT3G52180 67.0 1.2e-109 393.7
Cone5ag0149 . 21 288 Protein tyrosine phosphatase (PTP) family AT3G10940 70.6 5.6e-112 401.4
Cone1ag1626 . 1 172 Protein tyrosine phosphatase (PTP) family AT3G10940 57.8 4.1e-54 209.1
Cone18ag1361 . 140 587 Protein tyrosine phosphatase (PTP) family AT3G01510 70.8 2.0e-196 682.6
Cone11ag0116 . 136 534 Protein tyrosine phosphatase (PTP) family AT3G01510 61.7 6.3e-158 554.7
Cone12ag1505 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 55.0 7.4e-71 264.6
Cone5ag1838 . 22 186 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 5.0e-67 251.9
Cone10ag1396 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.2 4.2e-66 248.8
Cone8ag1552 . 3 194 Protein tyrosine phosphatase (PTP) family AT2G32960 55.5 1.0e-64 244.2
Cone5ag0937 . 4 161 Protein tyrosine phosphatase (PTP) family AT2G32960 52.1 8.2e-54 208.0
Cone12ag0399 . 1 334 Protein tyrosine phosphatase (PTP) family AT2G35680 57.0 1.7e-99 360.1
Cone8ag0418 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 3.2e-98 355.9
Cone4ag0974 . 12 267 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 1.8e-77 287.0
Cone7ag1160 . 25 267 Protein tyrosine phosphatase (PTP) family AT2G35680 53.5 4.1e-77 285.8
Cone4ag0974 . 30 219 Protein tyrosine phosphatase (PTP) family AT5G56610 51.5 1.6e-46 183.3
Cone8ag0418 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 51.4 1.4e-42 170.2
Cone12ag0399 . 38 210 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 4.0e-42 168.7
Cone5ag1838 . 15 187 Protein tyrosine phosphatase (PTP) family AT4G03960 71.1 3.8e-75 278.5
Cone12ag1505 . 40 209 Protein tyrosine phosphatase (PTP) family AT4G03960 74.7 5.0e-75 278.1
Cone10ag1396 . 23 206 Protein tyrosine phosphatase (PTP) family AT4G03960 69.5 3.6e-73 271.9
Cone8ag1552 . 16 194 Protein tyrosine phosphatase (PTP) family AT4G03960 70.9 1.3e-70 263.5
Cone5ag0937 . 15 165 Protein tyrosine phosphatase (PTP) family AT4G03960 63.6 4.0e-56 215.3
Cone1ag1691 . 16 130 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 3.4e-39 159.1
Cone5ag0937 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 2.4e-80 295.8
Cone1ag1691 . 16 158 Protein tyrosine phosphatase (PTP) family AT3G02800 72.7 4.2e-61 231.9
Cone5ag1838 . 24 182 Protein tyrosine phosphatase (PTP) family AT3G02800 62.9 6.7e-59 224.6
Cone12ag1505 . 45 204 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 5.7e-58 221.5
Cone10ag1396 . 36 203 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 1.3e-57 220.3
Cone8ag1552 . 45 196 Protein tyrosine phosphatase (PTP) family AT3G02800 63.8 1.4e-56 216.9
Cone1ag1316 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 70.2 5.2e-67 253.4
Cone5ag0297 . 31 219 Protein tyrosine phosphatase (PTP) family AT3G55270 69.1 5.2e-67 253.4
Cone4ag0515 . 1 371 Protein tyrosine phosphatase (PTP) family AT5G39400 58.7 3.1e-135 479.2
Cone7ag0488 . 1 291 Protein tyrosine phosphatase (PTP) family AT5G39400 52.8 5.3e-95 345.5
Cone3ag0992 . 1 618 Protein tyrosine phosphatase (PTP) family AT3G19420 66.2 8.9e-232 800.4
Cone10ag1013 . 1 515 Protein tyrosine phosphatase (PTP) family AT3G19420 72.4 8.1e-217 750.7
Cone8ag0143 . 83 664 Protein tyrosine phosphatase (PTP) family AT3G19420 60.7 9.0e-200 694.1
Cone8ag0143 . 93 660 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 4.9e-185 645.2
Cone3ag0992 . 43 618 Protein tyrosine phosphatase (PTP) family AT3G50110 57.8 6.9e-179 624.8
Cone10ag1013 . 35 522 Protein tyrosine phosphatase (PTP) family AT3G50110 63.5 9.4e-176 614.4
Cone2ag0575 . 1 1220 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 9.9e-302 1033.9
Cone17ag0984 . 1 1309 Protein tyrosine phosphatase (PTP) family AT5G58160 50.9 3.0e-290 995.7
Cone20ag0324 . 1 1253 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 1.4e-284 976.9
Cone15ag0895 . 1 399 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 1.8e-125 448.4
Cone11ag1023 . 15 858 Protein tyrosine phosphatase (PTP) family AT3G10550 69.5 0.0e+00 1171.0
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT3G10550 68.4 1.7e-217 753.4
Cone18ag0556 . 1 138 Protein tyrosine phosphatase (PTP) family AT3G10550 58.7 3.8e-39 161.0
Cone11ag1023 . 13 858 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1112.8
Cone18ag0555 . 9 555 Protein tyrosine phosphatase (PTP) family AT5G04540 68.6 6.9e-219 758.1
Cone11ag1360 . 68 247 Protein tyrosine phosphatase (PTP) family AT3G44620 65.5 1.5e-71 266.9
Cone18ag0218 . 43 248 Protein tyrosine phosphatase (PTP) family AT3G44620 59.4 1.5e-71 266.9
Cone13ag1383 . 1 677 Protein tyrosine phosphatase (PTP) family AT3G09100 70.8 9.6e-288 986.5
Cone19ag1373 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.4e-285 978.0
Cone19ag1373 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.0e-261 899.0
Cone13ag1383 . 5 677 Protein tyrosine phosphatase (PTP) family AT5G01290 64.6 1.9e-259 892.5
Cone13ag1383 . 79 688 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-188 657.1
Cone19ag1373 . 75 684 Protein tyrosine phosphatase (PTP) family AT5G28210 56.5 4.4e-186 648.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33