Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1385 ATGATTGCCGGTTTCTTTGATAAGCTCAAGAATTGTTTCAAACCAAAATATGGCTCTGCTCATCAACCCCCACAAGGGATTGTTACGAACAATATAAGAGTTTTCCCTTACAATGTACTGAGATTGGCAACCAAGAATTTCCATCCGTCAAGCCGAATAGGTGGAGGTGGTTACGGAGTAGTATACAAAGGAATTTTAAGAGACAGGACTCAAGTTGCTATTAAATCTCTCTCTGCAGAATCCAAACAAGGATCGCAAGAGTTCTTGACTGAGATAAATTTGATATCTAACATCATTCATCCAAACCTCGTTAAACTGATCGGTTGTTGTGTTGAAGACAATCATCGGATCTTAGTATATGAATTTCTCGAGAACAACAGCCTTGCCAGTATTCTACTCGGCTCTAAAAGTAAGCATGTTGCTTTGGATTGGGCAAAGAGGGCTGCAATCTGTTTAGATACAGCTTCTGGTCTTTGTTTTCTTCATGAGGAGACCCAACCGCCTATTGTCCATAGAGACATCAAGGCTAGTAATATTCTTCTGGATGGAAATTTTCGGCCTAAAATAGGAGATTTCGGGCTGGCAAAGCTTTTTCCAGATAACGTCACTCATATTAGTACTAGAGTGGCCGGAACCATTGGATATATAGCCCCTGAATATGCTCTGTTAGGACAACTTACAAAGAAGGCAGATATTTACAGTTTTGGTGTTCTCATGCTCGAGATAATTAGCGGCAGAAGTAGTAGTAAGGCTGCATTCGGGCAAGAGCTATTGATTCTGGTTGAATGGGCGTGGAAATTGTGGGAAGAAGGAAGGCTGCTAGAAATAGTAGATCCGGAACTGGTTGAATATCCAGAAAATGAGGTGATGCGGTTTATAAAGGTGGCATTGTTCTGTACGCAAGCAGGCGTGACTCAAAGACCAAATATGAAGCAAGTTGTGGAGATGCTTTCAAGAGAGGTCCACCTTAATGATAAGGCGCTAACCGAGCCCGGAGTATACAAGTCCAACACTTCTCGGCATTTTGCTGATGGGGCCAGTTCCGAGGACGCATCATCTTCTCAAACAGAAAAAGTTTCCGCAACCTGTATCTCTGCCTGTATTAAAAAAGACGTACCAAATCAGAAGCCATTACAGCTCTCAAATATCTTACTTGCCAAATCAGTGAAGAGAAAGGAAGGAAACCGGAGATTAGAAGAAAGAGCAGTTATCGGATTGACGCCTCTCTGTTTCACAGAAATCAAACGCCAGAATCTGGAATTTGAAAATCTCTGA 1275 41.96 MIAGFFDKLKNCFKPKYGSAHQPPQGIVTNNIRVFPYNVLRLATKNFHPSSRIGGGGYGVVYKGILRDRTQVAIKSLSAESKQGSQEFLTEINLISNIIHPNLVKLIGCCVEDNHRILVYEFLENNSLASILLGSKSKHVALDWAKRAAICLDTASGLCFLHEETQPPIVHRDIKASNILLDGNFRPKIGDFGLAKLFPDNVTHISTRVAGTIGYIAPEYALLGQLTKKADIYSFGVLMLEIISGRSSSKAAFGQELLILVEWAWKLWEEGRLLEIVDPELVEYPENEVMRFIKVALFCTQAGVTQRPNMKQVVEMLSREVHLNDKALTEPGVYKSNTSRHFADGASSEDASSSQTEKVSATCISACIKKDVPNQKPLQLSNILLAKSVKRKEGNRRLEERAVIGLTPLCFTEIKRQNLEFENL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9145092 9149084 - Conep19aG0142200.1 Cone19ag1385 459822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1385 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1385 424 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Cone19ag1385 424 Gene3D Phosphorylase Kinase; domain 1 11 122 - -
Cone19ag1385 424 Pfam Protein tyrosine and serine/threonine kinase 51 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1385 424 CDD STKc_IRAK 65 319 - -
Cone19ag1385 424 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Cone19ag1385 424 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 353 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone19ag1385 424 SMART serkin_6 47 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1385 424 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1385 424 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Cone19ag1385 424 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Cone19ag1385 424 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 20 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1385 Cone-Chr19:9145092 Cone6ag1029 Cone-Chr6:5801684 2.38E-142 dispersed
Cone13ag1396 Cone-Chr13:10114667 Cone19ag1385 Cone-Chr19:9145092 2.79E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82426 PF16879 Sin3a_C 8.80E-56 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1385 - - - 0.0