Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1416 ATGGCTCAACAGCGGCGACAACGCGTGGCAACTGACATCTTCCACACTGGTTGGACTTCAATCTATGCCGGGCCTAGTCATCCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTAAACTCCGCCTTCATGGCCCTCTACGCCTTCGCCGCCACACTCCTCTGTTGGGTGCTGTTGGGCTACCGGATGGCCTTCGGAGACAAGCTCCTCCCCTTTTGGGCCAAAGGGGCCCCAGCTTTGGCCAGAAATACCTCACCAAACAGGCCGTCATCCCCGAAAGCGCTCACCGTTACGACAACGGCACGATCGAAACGCCGCGTGTCGAGCCATTCTACCCCATGGCAACGCTCGTTTACTTTCAGTTCACTTTCGCCGCCATCACAATCATCCTCTTAGCCGGTTCGGTTCTGGGCCGAATGAGCATCAAAGCGTGGATGCTTTTTGTGCCTCTCTGGCTCATCTTTTCCTACACCGTCGGTGCTTTTAGCCTCTGGGGTGGCGGTTTTTTCTATCAATGGGTGGTCATCGATTACTCAGGAGGTTACGTAATCCATCTCTCTTCAGGTGGGTACGAGGATAAAGGGAGACAGGGAGAGATTTTCGCCGAACAATGTGTTGCTGATGCTCGCCGGAGCAGGGCTAACGTGGATGGGTTGGTCAGGTTCAACGGCGGCGCGCCACGTGCCGCGAACGTTGTTGCTTGGATTGCTGTATTGAACACGAATGTGAGCGCGGCCACTAGTCTTCTTGTCTGGACGACCCTGGATGTTATCTCTTTCGGAAAACCGTCAGTGATCGGAGCTGTTCAGGGTATGATTACCGGTCTGGCTTGCGTTACGCCGGGAGCAGGGGTGGTCCAAACATGGGCAGCTATGATGGGAATCCTTGCCGGTAGTATTCCATGGGTCTCCATGATGATTCTTCACAAGAAGAGCGCTCTGCTTCAAAAGGTGGACGACACTCTCGGTGTGTTTCACACTCATGCGGTATCTGGGCTGTTGGGTGGGCTTCTAACTGGGCTTTTAGCAGAACCAACTCTGTGTGATATGAGCCAACCGGTGACCGGCACAAAGGGTGCGATCTACGGGTCCGGGATGCAGTTCGTGAAGCAATTAGTGGCGGCCATGTTTGTAATAGGATGGAACTTCTTGTCCACAACGATAATCCTGCTGTTTATAAGACTGTTCGTTCCATTGAGGATGCCTGAAGAGGATCTCATGATAGGAGACGACGCCGTTCATGGAGAAGAGGCTTATGCTCTTTGGGGAGACGGTGAGAAGTTTGACCCGACTAGACACGGGTCAAATATTTCGCCCCTTGGGAAAGAGAGATCGCAGTCGCCTTATGTCAGTGGAGCTAGAGGCGTCACCATCGACCTCTAA 1383 53.51 MAQQRRQRVATDIFHTGWTSIYAGPSHPLRQHRQKEMGRKLRLHGPLRLRRHTPLLGAVGLPDGLRRQAPPLLGQRGPSFGQKYLTKQAVIPESAHRYDNGTIETPRVEPFYPMATLVYFQFTFAAITIILLAGSVLGRMSIKAWMLFVPLWLIFSYTVGAFSLWGGGFFYQWVVIDYSGGYVIHLSSGGYEDKGRQGEIFAEQCVADARRSRANVDGLVRFNGGAPRAANVVAWIAVLNTNVSAATSLLVWTTLDVISFGKPSVIGAVQGMITGLACVTPGAGVVQTWAAMMGILAGSIPWVSMMILHKKSALLQKVDDTLGVFHTHAVSGLLGGLLTGLLAEPTLCDMSQPVTGTKGAIYGSGMQFVKQLVAAMFVIGWNFLSTTIILLFIRLFVPLRMPEEDLMIGDDAVHGEEAYALWGDGEKFDPTRHGSNISPLGKERSQSPYVSGARGVTIDL 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9255309 9257282 - Conep19aG0145300.1 Cone19ag1416 459853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1416 460 Gene3D Ammonium transporter AmtB like domains 77 191 IPR029020 -
Cone19ag1416 460 Pfam Ammonium Transporter Family 116 189 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone19ag1416 460 Pfam Ammonium Transporter Family 220 419 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone19ag1416 460 Gene3D Ammonium transporter AmtB like domains 217 422 IPR029020 -
Cone19ag1416 460 PANTHER AMMONIUM TRANSPORTER MEP2 220 430 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cone19ag1416 460 SUPERFAMILY Ammonium transporter 108 401 - -
Cone19ag1416 460 FunFam Uncharacterized protein 227 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1416 Cone-Chr19:9255309 Cone9ag1205 Cone-Chr9:8692128 9.05E-157 dispersed
Cone13ag1420 Cone-Chr13:10207071 Cone19ag1416 Cone-Chr19:9255309 9.76E-224 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1416 K03320 - mdm:103450680 541.962