Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1424 ATGCATATTTTTCTGAAAGGGGAAACCGACTGGAGCTGCAATCTACCTAAAACGAATAAAAAATGGAAGCTTTGTTCATCTACTAGAATGTCAAACAAAACTTCCCTCTTCCTCTTCTTCCTTATTCAGCTTCAAGCTCTCACCTTTCATCTCGTATCATCCCAAGGGGATGGAGTTTTTGTTACACAAGCAGATTACAAAGCACTACGAGCCTTCGAGAATGAACTCATTGATTTCAGAGGAGTTCTGCGTAGCTGGAATGACAGTGGCTATGGAGCTTGTTCGGGCGGCTGGATCGGAATCAAGTGTGTGAAGGGACAAGTTATTGCCATACAACTTCCATGGAAAACACTTGGAGGTAAAATCTCAGAGAAAATTGGATCTCTTCAACAGCTTAGACGGCTTAGTCTCCATGACAATCTTCTTTCTGGTCCTCTTCCTCTATCTCTTGGATCCCTCTCCAAACTCAGAGGAGTCTACCTTTTCAACAACCGATTTTCTGGTTCCATCCCTTCTTCAATCGGTAAATGTCTTCTACTTCAAGCTCTTGACATCAGCAATAATTCATTCACCGGAGGAATTCCCCCTAGTCTTGGAAATTGCAAGAGGTTACTTAGATTGAATCTGAGCCACAATTCTTTGTCGGGTTTAATCCCCAGCAGTCTCACTACTTCCCCTTCTCTTACATTCCTTTCTCTTGAGCATAACAACCTTTCGGGTTCCATACCGGATAGCTGGAATGGATCGGAAAATGAGACTTACCAACTTCAGTTTTTGAGCCTTGATCATAATCTCATCACTGGAGAGATTCCAGTCTCTCTTGGGAAGTTGAGTGGGCTTGAAGAGATTTCTCTGAGCCACAACCAGCTTTCCGGGATCATCCCGAGTGAACTAGGCAGGCTTTCAAAGCTACGCCTGCTAGATTTATCAAACAATGATCTCAATGGAAGCTTTCCCTCTACCTTTTCCAATCTCTCCTCTATTGTTTCCTTGAATCTCGAAAGTAACCGCCTCAACAAACCGATCCCAGAAGCCTTGGATGGGTTGAAGAATCTGTCAGTTCTCAACCTAAGAAATAACCACTTCAATGGTCAAATCCCTGAAACTATTGGAAACATTCCAGGAATCAGCCAAATCGACTTATCCGATAACAACTTTACCGGAAATATTCCAGCTTCACTATCCAGTCTAGTCAGTCTAACTTCTTTCAATGTCTCTTACAACAATCTTTCCGGCGAGGTCCCACCTCTCCTCTTGAAAAAGTTCAATTCGACTTCCTTTAGAGGAAACCTACAACTATGTGGGTATAGCTCTTCGACCCCATGCCCTCCTCCCTCTTCCCCAGCACTACCACCACCATCACAGCAGGCGGCTCCAAAGCGGCACCACCACAAACTTAGTACAAAGGACATAATTCTGATTGTAGTAGGTGCTGTCCTGGCATTAGTTCTTTTACTTACACTTTGCTTAACTTTACTATGTTGTTTGATTAAGAGAAAGACTCCTGGAAAGAAAGGGAATGGTGAAACCACCGCAAAGCAGGCTGCTGATGTGGGGGGCACTGAGAAGGCAGTTACTGTTACCGGAGTCGGCTCGGGTGAAGCAGGTGGAAAACTGGTCCATTTTGACGGCCCGTTTGTTTTTACAGCCGATGATTTACTATGCGCAACTGCAGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACGCTAGAGGATGGGCACGAAGTAGCAGTGAAGAGGTTGAGAGAAAAAACAACAAAAGGACAGAAAGAGTTTGAAACTGAAGTTGCGGAACTCGGCAAAATGAGACACCAAAATCTGTTATCGCTTAGAGCTTACTACTTGGGACCTAAAGGAGAGAAGCTTCTTGTCTATGATCACATGCCTAAAGGGACACTCTCTTCATTCCTTCATGCACGGGGCCCAGAAAGCACGATAGATTGGGCGACGAGGATGAAGATAGCAATGGGAATCACACGCGGGCTAGGATACCTCCACGGACAAGAGAACTTATCAGTACATGGGAATCTGACATCTGACAACATCATATTGGACGAGAAAACTGAGCCGCACATAGCAGATTGTGGACTGTCAAGGCTAATGACCACTTCTGTCAACACAAATGCGATTGCTACGGCAGGAACACTGGGTTATAACGCACCCGAGCTTGCAAAGAACAAGAAGCCCACAACAAAGTCGGATATTTATAGCCTTGGGGTGATCATATTGGAGCTATTGACTGGGAAATCACCAGGTGAAGCGATGAATGGGATGGATTTGCCTCAATGGGTGGCTTCTATAGTGAAGGAAGAGTGGACTAATGAAGTTTTTGATTTGGAGCTAATGAGGGATGCACCTGTTATAGGTGATGAGCTTCTTAATACATTGAAATTGGCTTTGCATTGTGTGGATCCCTCACCAGCTGCTCGGCCTGATGCTCAGTTGATTCTCCAGCAACTGGAGGAGATTAAGCCAGAGCTTGCCTCTGCTTCTGGCGATGACGGAGCAGTCAAATTAGCACAACCAGGAAATGAGCAGTGA 2553 44.85 MHIFLKGETDWSCNLPKTNKKWKLCSSTRMSNKTSLFLFFLIQLQALTFHLVSSQGDGVFVTQADYKALRAFENELIDFRGVLRSWNDSGYGACSGGWIGIKCVKGQVIAIQLPWKTLGGKISEKIGSLQQLRRLSLHDNLLSGPLPLSLGSLSKLRGVYLFNNRFSGSIPSSIGKCLLLQALDISNNSFTGGIPPSLGNCKRLLRLNLSHNSLSGLIPSSLTTSPSLTFLSLEHNNLSGSIPDSWNGSENETYQLQFLSLDHNLITGEIPVSLGKLSGLEEISLSHNQLSGIIPSELGRLSKLRLLDLSNNDLNGSFPSTFSNLSSIVSLNLESNRLNKPIPEALDGLKNLSVLNLRNNHFNGQIPETIGNIPGISQIDLSDNNFTGNIPASLSSLVSLTSFNVSYNNLSGEVPPLLLKKFNSTSFRGNLQLCGYSSSTPCPPPSSPALPPPSQQAAPKRHHHKLSTKDIILIVVGAVLALVLLLTLCLTLLCCLIKRKTPGKKGNGETTAKQAADVGGTEKAVTVTGVGSGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGHEVAVKRLREKTTKGQKEFETEVAELGKMRHQNLLSLRAYYLGPKGEKLLVYDHMPKGTLSSFLHARGPESTIDWATRMKIAMGITRGLGYLHGQENLSVHGNLTSDNIILDEKTEPHIADCGLSRLMTTSVNTNAIATAGTLGYNAPELAKNKKPTTKSDIYSLGVIILELLTGKSPGEAMNGMDLPQWVASIVKEEWTNEVFDLELMRDAPVIGDELLNTLKLALHCVDPSPAARPDAQLILQQLEEIKPELASASGDDGAVKLAQPGNEQ 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9287649 9290900 - Conep19aG0146400.1 Cone19ag1424 459861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1424 850 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515(InterPro)
Cone19ag1424 850 Pfam Leucine Rich Repeat 399 418 IPR001611 GO:0005515(InterPro)
Cone19ag1424 850 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515(InterPro)
Cone19ag1424 850 Pfam Leucine Rich Repeat 156 177 IPR001611 GO:0005515(InterPro)
Cone19ag1424 850 Pfam Protein tyrosine and serine/threonine kinase 558 824 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1424 850 SUPERFAMILY L domain-like 102 440 - -
Cone19ag1424 850 Gene3D Ribonuclease Inhibitor 64 179 IPR032675 -
Cone19ag1424 850 MobiDBLite consensus disorder prediction 831 850 - -
Cone19ag1424 850 FunFam Leucine-rich repeat receptor-like protein kinase 62 220 - -
Cone19ag1424 850 CDD STKc_IRAK 561 827 - -
Cone19ag1424 850 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 632 836 - -
Cone19ag1424 850 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Cone19ag1424 850 Gene3D Transferase(Phosphotransferase) domain 1 633 840 - -
Cone19ag1424 850 ProSiteProfiles Protein kinase domain profile. 555 831 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1424 850 Pfam Leucine rich repeat N-terminal domain 64 103 IPR013210 -
Cone19ag1424 850 Gene3D Ribonuclease Inhibitor 254 445 IPR032675 -
Cone19ag1424 850 Gene3D Ribonuclease Inhibitor 180 253 IPR032675 -
Cone19ag1424 850 FunFam Leucine-rich repeat receptor-like protein kinase 541 631 - -
Cone19ag1424 850 MobiDBLite consensus disorder prediction 438 462 - -
Cone19ag1424 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 274 838 IPR052451 -
Cone19ag1424 850 MobiDBLite consensus disorder prediction 441 455 - -
Cone19ag1424 850 SMART LRR_typ_2 397 421 IPR003591 -
Cone19ag1424 850 SMART LRR_typ_2 153 177 IPR003591 -
Cone19ag1424 850 SMART LRR_typ_2 277 300 IPR003591 -
Cone19ag1424 850 SMART LRR_typ_2 349 373 IPR003591 -
Cone19ag1424 850 SMART LRR_typ_2 325 348 IPR003591 -
Cone19ag1424 850 SMART LRR_typ_2 301 324 IPR003591 -
Cone19ag1424 850 PRINTS Leucine-rich repeat signature 301 314 - -
Cone19ag1424 850 PRINTS Leucine-rich repeat signature 204 217 - -
Cone19ag1424 850 SUPERFAMILY Protein kinase-like (PK-like) 559 829 IPR011009 -
Cone19ag1424 850 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 248 446 - -
Cone19ag1424 850 Pfam Leucine rich repeat 319 362 IPR001611 GO:0005515(InterPro)
Cone19ag1424 850 Pfam Leucine rich repeat 256 314 IPR001611 GO:0005515(InterPro)
Cone19ag1424 850 Pfam Leucine rich repeat 180 238 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0796 Cone-Chr18:4626967 Cone19ag1424 Cone-Chr19:9287649 1.84E-65 dispersed
Cone19ag1424 Cone-Chr19:9287649 Cone1ag1640 Cone-Chr1:57709724 2.01E-174 dispersed
Cone13ag1426 Cone-Chr13:10242041 Cone19ag1424 Cone-Chr19:9287649 1.71E-293 wgd
Cone19ag1424 Cone-Chr19:9287649 Cone5ag0167 Cone-Chr5:695792 2.51E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82429 PF07816 DUF1645 2.00E-28 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1424 - - - 0.0