Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1441 ATGCCAGAGGCTGAGAATGGTCCCGGTCATGTTGCGCTTCCGGTGTCCGGAGAGGCTAATAAGAAGCCGGAAGTGAACTTGTTCGGTAAATATCAAGTGGGTAAATTGTTGGGATGTGGAGCATTTGCCAAGGTATACCACGCCAGGAATGTCAACACCGGTCAAAGCGTCGCGATCAAGGCCGTGAGCAAGCAAAAGATCTTGAAAGGTGGCCTCACCACGCACATTAAGAGGGAGATCTATATCATGCGCCGCCTTCACCATCCTCACATCATCAGGTTGTTTGAGATCATGGCCACCAAGACCAAGATTTACTTCGTCATGGAATTCGCCAAAGGTGGTGAACTCTTCACCAAAGTAGCCAGAGGACGCTTTAGCGAAGATCTCAGCCGTCGCTACTTCCAGCAGCTTATCTCGGTCGTGGAATACTGTCACTCGCGAGGTGTATTCCATCGCGATCTGAAGCCCGAGAATCTCCTGCTCAACGACAACTGGGAACTCAAGGTCTCAGATTTCGGACTCAGCGCCGTCAATGATCAGACCCAACCCGACGGGTTGCTCCACACGCTTTGTGGTACCCCTGCTTACGTGGCACCCGAGGTTCTGGCCAAGAAAGGCTACGACGGCGCCAAGGTGGACATATGGTCATGCGGCGTCGTTCTATTCGTCCTCAACGCCGGTTATTTACCGTTCAACGACCCGAATCTCATGGGCATGTATCGCAAGATCTACAAAGGCGATTTCAGGTGCCCCAAATGGACCTCGCCTGATCTGCGTCGATTCATATCGCGCATGCTCGACACGAATCCCGAGACAAGGATCACAGTTGATGAGATCCTGCGCGATCCTTGGTTCAAGAAAGGGTACAGGGAGATTAAGCTTCATCGTGACGACTCTTATTCCAAAAATTACGGGGACGAAGGCAGCGCTAAGTACTTCAACGCTTTCGATTTGATCTGGTTCTCCTCCGGATTTGATCTCAACGCTCTGCTAAGGGACTCGGAGACTTCATACAGCGGAGAACAGTTTTTATCGGCGGATCCGGCGGAGCGAATCCTTGAGAGAATAGAGGAGGTCTCGAAGACGGAAAAGGTAACAGTGGCTAAGAAGGATTGGGGCGCCAAACTGGAGGATCAAAACGGTAACTTCGTGGTAATTGTAGACGTTTTCAGGCTGACAGATAAGTTTGTAATGGTAAAGATAATGAACAGAGAGAGGGACGTGGGACCCAGCAACCGGATATGGAAAGATAAGCTAAGGCCCCAGCTGGATCATTTCATTTACCGATCAGAAAAGCCGGATGAAAATTAG 1311 50.5 MPEAENGPGHVALPVSGEANKKPEVNLFGKYQVGKLLGCGAFAKVYHARNVNTGQSVAIKAVSKQKILKGGLTTHIKREIYIMRRLHHPHIIRLFEIMATKTKIYFVMEFAKGGELFTKVARGRFSEDLSRRYFQQLISVVEYCHSRGVFHRDLKPENLLLNDNWELKVSDFGLSAVNDQTQPDGLLHTLCGTPAYVAPEVLAKKGYDGAKVDIWSCGVVLFVLNAGYLPFNDPNLMGMYRKIYKGDFRCPKWTSPDLRRFISRMLDTNPETRITVDEILRDPWFKKGYREIKLHRDDSYSKNYGDEGSAKYFNAFDLIWFSSGFDLNALLRDSETSYSGEQFLSADPAERILERIEEVSKTEKVTVAKKDWGAKLEDQNGNFVVIVDVFRLTDKFVMVKIMNRERDVGPSNRIWKDKLRPQLDHFIYRSEKPDEN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9385129 9387069 - Conep19aG0148200.1 Cone19ag1441 459878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1441 436 Pfam NAF domain 312 369 IPR004041 GO:0007165(InterPro)
Cone19ag1441 436 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 407 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone19ag1441 436 CDD CIPK_C 314 424 - -
Cone19ag1441 436 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165(InterPro)
Cone19ag1441 436 SMART serkin_6 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1441 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone19ag1441 436 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1441 436 Gene3D Kinase associated domain 1, KA1 314 429 - -
Cone19ag1441 436 ProSiteProfiles Protein kinase domain profile. 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1441 436 FunFam Non-specific serine/threonine protein kinase 21 311 - -
Cone19ag1441 436 Gene3D Transferase(Phosphotransferase) domain 1 21 313 - -
Cone19ag1441 436 SUPERFAMILY Protein kinase-like (PK-like) 28 296 IPR011009 -
Cone19ag1441 436 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Cone19ag1441 436 FunFam Aurora kinase A 24 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1441 Cone-Chr19:9385129 Cone3ag0471 Cone-Chr3:2291342 4.40E-212 dispersed
Cone10ag0437 Cone-Chr10:2031148 Cone19ag1441 Cone-Chr19:9385129 3.19E-139 wgd
Cone19ag1441 Cone-Chr19:9385129 Cone3ag0468 Cone-Chr3:2270645 1.52E-138 wgd
Cone19ag1441 Cone-Chr19:9385129 Cone5ag1046 Cone-Chr5:4578612 1.29E-181 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82430 PF01326 PPDK_N 1.90E-19 CL0179 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1441 - - - 0.0