Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1453 ATGCTATTCCTTCCTTTCCTAATATCTCTTGTTCTATGTCCTGCCCTCGTACATTCTTTAGACCCTGCTTTCAACGACGACGTTCTGGGATTGATCGTATTTAAGGCTGGTCTTCAAGATCCCAATGCTAAACTTACATCATGGAATGAGGAAGATGATAATCCCTGCTACTGGGTTGGAGTCAAATGCGATCCTATAACCAATAGGGTTTCAGAACTTGTCCTTGATAGGTTCACTCTCTCCGGACATATCAACCGTGGCCTCCTTAGACTGCAGTTTCTCCAAAAGCTATCTCTTTCCCACAATAACTTTACAGGGATCATAAACCCTGCTCTTTCTCACTTTGCAAGTTTGCAAGTCATTGACTTGAGTTACAACAGCTTATGCGGGGCGATACCAGATGACTTTTTCCAGCAATGTGGAGCGTTGAGAATAATTTCACTTGCTAGAAACAACCTCACAGGACATATTCCTGATTCTCTAAGCTCCTGCTTCACACTGACAGATGTTAACTTTTCGTCTAACCAGCTATCTGGGAAATTACCTTCTGGAATATGGTTTTTGAGGGGGATTCAGTATCTTGATTTGTCAGATAACTTGCTGGAGGAAGAGATTCCTCAAGGAATTGAAAATTTGTACGATTTGAGAGTCTTAAACTTGAAGAAGAATCGATTTTCGGGGAAGCTTCCTGAGGATATTGGAGGCTGTTTGCTTTTACAGTTTCTCGATCTTAGTGAGAATTTTCTTTCAGGGTATCTTCCAGTGTCCATACGGAGGCTCAATCTGTGCACTTCTCTCAGTTTTCGAGCAAATTCTTTCATAGGAGGAGTTCCAGACTGGATCGGAGAAATGAAAGACCTTGAGAATTTGGATCTATCTGCAAATAACTTTTCGGGTCCGATTCCAAGTTCAATTGGCAATCTTCAATCTCTGAAAAAGTTGAACATATCCATGAATCACCTTACTGGAACCCTGCCAGACTCGATGTCAAATTGCACAAACCTTTCAGCCATTTCTGCAAGCCATAATTTCTTGACTGGTAATCTTCCTTCATGGATTTTTACACCTCATATGCTGAATATTTCTGTTTCTGAGCACAAGACCGGTCGAAGCTTAGAGTATCTTCCATCATCAAATTCAACTTCTCGTCTTGGTCTTCAGGTTTTGGATTTATCTTCAAATGCATTATCTGGTCAATTCCCTTCTAACATAGGATATCTCAGTAGCTTGCAGCTCCTGAACATGTCCGGGAACTATCTATTTGGTACAATTCCTGGGACAATTGGTAACTTAAAATATATATTTGCCCTTGACTTGAGTTGCAATCAACTCAATGGAAGCATTCCTTCTGAAATTGGGGGAGCAGTTTCACTCAAGGAGTTGAGGCTAGAGAAGAACTTCCTTACGGGGAAAATTCCTACACAGATTGAAAAATGTTCATTTCTCACGTCTCTGATAGTGTCTCAGAACAACCTCAGTGGCCCCATTCCAGCAGCCATTGCAAAGCTCCACAATCTACAGCATGTAGACCTGTCTTTGAATAAAGTCTGTGGAAGCTTGCCAAAGGGGCTGACAAATCTTTCCAACCTCCTCTCTTTTAATGTCTCCCATAATCAACTTGAAGGAGAGCTGCCTGTTGGGGGCTTCTTCAATACTATATCTCCCTCATCTGTGTCAGGTAATCCTTCCCTTTGCGGCGCTGTTGTGAACCACTCCTGCCCTGCTGTCCATCCCAAACCAATCGTCCTTAACCCTAATTCTTCGGGCACGAATGGCGGTTTTTCCCCTCAACATCATCATGAGAAGAAGATTGTACTCAGCATATCTTCCCTCATTGCCATTGGTGCAGCCGCTTTCATTGCCCTAGGGGTGGTTGCTGTTACTGTACTCAATATTCGTGCACAGTCTTCCATGCCTCCTTCTGCTGCTCCTCTATCATCATCTGCTGGGGAAGATTTCAGTTGTTCTCCAAATACGGATCCAAACTACGGCAAGCTTGTCATGTTTTCTGGTGATGCTGACTTTGTAGCTGGGGCCCAAGCATTGCTAAACAAGGACTGTGAGCTTGGTCGTGGTGGGTTTGGAGTCGTTTATAAAACAGTCCTTGGGGATGGACGTTCAGTTGCAATCAAGAAGCTAACTGTCTCAAGTTTGATCAAGTCTCAAGAAGATTTTGAGAGCGAGGTAAAGAAACTTGGGAAACTCAGGCACCATAATCTTGTGGCACTTGAAGGGTATTACTCGACTCCTTCCTTGCAGCTCCTTATCTATGAATACATCCCCAATGGAAGTTTGTACAAGCATCTCCATGACGGACCTGAAAACAAGTATCTTTCTTGGCAAGAGAGGTTCAACATAGTTCTTGGGATGGCAAAAGGTTTGGTGCATCTGCACCAGAAGAACATTATTCATTACAACCTGAAATCCACGAATGTGCTCCTAGACAGCTCCGGTGAGCCAAAGATTGGGGACTATGGGTTGGCAAGATTGTTGCCAATGTTAGACCGTTGCATCTTAAGCAGCAAAATTCAAAGTGCACTAGGGTACATGGCTCCAGAGTTTGCATGTAAAACAGTAAAAATAACCGAGAAGAGTGATGTTTATGGCTTTGGAGTCTTAATCTTGGAAGTGGTGACAGGAAAGAGGCCTGTGGAATATATGGAAGATGATGTGGTGGTGGTTTGTGACATGGTGAGGGGGGCCTTGGAGGAAGGCAGAGTGGAGGACTGTGTTGATACGAGGCTACTTGGCATCTTCCCAGCAGAGGAGGCGATTCCTGTAATTAAGCTGGGTCTAATCTGTGCTTCTCATGTGCCATCCAACCGTCCGGACATGAGTGAGGTGGTCAATATTCTACAATTGATCCAATGCCCTTCCGAAGCCGAGGAGAATTTGGAATGA 2901 43.74 MLFLPFLISLVLCPALVHSLDPAFNDDVLGLIVFKAGLQDPNAKLTSWNEEDDNPCYWVGVKCDPITNRVSELVLDRFTLSGHINRGLLRLQFLQKLSLSHNNFTGIINPALSHFASLQVIDLSYNSLCGAIPDDFFQQCGALRIISLARNNLTGHIPDSLSSCFTLTDVNFSSNQLSGKLPSGIWFLRGIQYLDLSDNLLEEEIPQGIENLYDLRVLNLKKNRFSGKLPEDIGGCLLLQFLDLSENFLSGYLPVSIRRLNLCTSLSFRANSFIGGVPDWIGEMKDLENLDLSANNFSGPIPSSIGNLQSLKKLNISMNHLTGTLPDSMSNCTNLSAISASHNFLTGNLPSWIFTPHMLNISVSEHKTGRSLEYLPSSNSTSRLGLQVLDLSSNALSGQFPSNIGYLSSLQLLNMSGNYLFGTIPGTIGNLKYIFALDLSCNQLNGSIPSEIGGAVSLKELRLEKNFLTGKIPTQIEKCSFLTSLIVSQNNLSGPIPAAIAKLHNLQHVDLSLNKVCGSLPKGLTNLSNLLSFNVSHNQLEGELPVGGFFNTISPSSVSGNPSLCGAVVNHSCPAVHPKPIVLNPNSSGTNGGFSPQHHHEKKIVLSISSLIAIGAAAFIALGVVAVTVLNIRAQSSMPPSAAPLSSSAGEDFSCSPNTDPNYGKLVMFSGDADFVAGAQALLNKDCELGRGGFGVVYKTVLGDGRSVAIKKLTVSSLIKSQEDFESEVKKLGKLRHHNLVALEGYYSTPSLQLLIYEYIPNGSLYKHLHDGPENKYLSWQERFNIVLGMAKGLVHLHQKNIIHYNLKSTNVLLDSSGEPKIGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVKITEKSDVYGFGVLILEVVTGKRPVEYMEDDVVVVCDMVRGALEEGRVEDCVDTRLLGIFPAEEAIPVIKLGLICASHVPSNRPDMSEVVNILQLIQCPSEAEENLE 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9435329 9439664 - Conep19aG0149400.1 Cone19ag1453 459890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1453 966 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
Cone19ag1453 966 SUPERFAMILY Protein kinase-like (PK-like) 687 954 IPR011009 -
Cone19ag1453 966 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 184 - -
Cone19ag1453 966 FunFam Inactive leucine-rich repeat receptor-like protein kinase 185 279 - -
Cone19ag1453 966 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Cone19ag1453 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 304 577 - -
Cone19ag1453 966 ProSiteProfiles Protein kinase domain profile. 683 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1453 966 SUPERFAMILY L domain-like 41 361 - -
Cone19ag1453 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 760 961 - -
Cone19ag1453 966 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524(InterPro)
Cone19ag1453 966 Gene3D Ribonuclease Inhibitor 287 576 IPR032675 -
Cone19ag1453 966 Gene3D Ribonuclease Inhibitor 184 279 IPR032675 -
Cone19ag1453 966 SMART LRR_typ_2 115 139 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 188 211 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 407 431 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 91 114 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 308 332 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 503 526 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 212 236 IPR003591 -
Cone19ag1453 966 SMART LRR_typ_2 527 551 IPR003591 -
Cone19ag1453 966 Gene3D Phosphorylase Kinase; domain 1 671 759 - -
Cone19ag1453 966 SUPERFAMILY RNI-like 265 551 - -
Cone19ag1453 966 CDD STKc_IRAK 689 955 - -
Cone19ag1453 966 Pfam Leucine Rich Repeat 409 431 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 482 503 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 143 164 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 239 260 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 215 236 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 117 137 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 Pfam Leucine Rich Repeat 437 454 IPR001611 GO:0005515(InterPro)
Cone19ag1453 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 759 - -
Cone19ag1453 966 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cone19ag1453 966 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 264 955 IPR051564 GO:0016020(PANTHER)
Cone19ag1453 966 Pfam Protein kinase domain 686 890 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1453 966 Pfam Leucine rich repeat 287 343 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0675 Cone-Chr14:3469790 Cone19ag1453 Cone-Chr19:9435329 7.06E-208 dispersed
Cone15ag0686 Cone-Chr15:3682084 Cone19ag1453 Cone-Chr19:9435329 8.23E-196 dispersed
Cone18ag0894 Cone-Chr18:6312411 Cone19ag1453 Cone-Chr19:9435329 9.06E-102 dispersed
Cone19ag1453 Cone-Chr19:9435329 Cone6ag0724 Cone-Chr6:3656883 5.19E-83 dispersed
Cone13ag1451 Cone-Chr13:10386418 Cone19ag1453 Cone-Chr19:9435329 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82434 PF08238 Sel1 7.30E-09 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1453 - - - 0.0