Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1459 ATGGTTTCCCCGCAGTTTTCTGGTTTGACCAATAGCGGCAATGGCAAGCCAATTCAAAATCGCTTCCTTATTCCTCTGAACCATCCGGAAGTTATAGCTCCTGACCACGTTGAGCTAGATTTCTCTGATTTATTTGGCCCTCCGCCTGCTCAGGCCACAGATGAAATGAATCCTAATCCTGGTTGTTTGGAAGATACTAGCAAGTTTATTTATAATGATCCAGAGGTCATCTACAATCGGTCACATTCTTTAGTTGGTCCCTCTTCTTGTGTGAGTCAATCAGCTAAGCTCAGCAATCTCATCATACACGAGATTGATGAGTCAGGGGAGCTAGTCGAATTCATCAATGAGAAGGCCATAGGAAATGTTCAGGAACCTGATAGTAGTGATGATTTTATTGAGAAAACTCTTGAAGATTTCAACGATTCTAAGGCATGGAGTGTGGGCATTGATGATTTTGAGGCTTTGAAGGTTGTTGGTCAAGGTGCATTTGCTAAGGTTTATCAAGTGAGGAAAAAGGGTACAGTGGACATATATGCAATGAAAGTGATGCGCAAGGACAAGATAATGGAGAAGAATCACGCTGAGTACATGAAAGCTGAGCGGGATATTTTGACAAAAATAGAACACCCCTTCATTGTTCAGCTCAGATACTCCTTCCAGACCAAATACAGGCTTTATCTTGTTCTGGACTTTGTAAATGGGGGTCACCTTTTCTTTCAGCTCTATCATCATGGTCTTTTCAGAGAGGATCTTGCACGTATATATGCTGCTGAGATAGTTTCTGCAGTTTCACACCTCCATGCAAATGGCATAATGCACCGAGATCTTAAACCTGAGAATATTTTACTGGATGCTGATGGCCATGTAATGTTGACGGATTTTGGACTGGCAAAGCAATTTGAAGAGAATACAAGATCAAATTCCATGTGTGGGACAGTTGAATACATGGCTCCGGAAATAGTTCTTGGGAAGGGACATGATAAGGCTGCAGATTGGTGGAGTGTAGGAGTACTACTGTTTGAGATGCTTACTGGCAAGCCGCCTTTCACTGGTAACCGGGTGAAAGTCCAGCAGAAGATAGTAAAGGAAAAGATCAAGCTGCCAGCATTTCTGTCTAGCGAAGCACATGCTCTGCTGAAAGCATTACTGCAAAAGGATGCAATGAAGCGCTTAGGAAGTGGAGCAATGGGGAGTGAGGAAATCAAGCAGCACAAGTGGTTCAAGCAGATCAATTGGAAGAAGTTGGAGGCCCGCCAAATTGAACCGAGTTTTCGCCCTCAAGTTGCCGGGAAGCATTGCGTTGCCAACTTTGAGAAGCACTGGACAGACATGCCACTTGTAGATTCCCCAGTTGCTAGTCCAACTGCTGTTGGAAGTCACTTCATTGGATTTACCTATGTAAGGCCAGCACCGGCGTTCCTTCTAGCTGACTGA 1437 44.05 MVSPQFSGLTNSGNGKPIQNRFLIPLNHPEVIAPDHVELDFSDLFGPPPAQATDEMNPNPGCLEDTSKFIYNDPEVIYNRSHSLVGPSSCVSQSAKLSNLIIHEIDESGELVEFINEKAIGNVQEPDSSDDFIEKTLEDFNDSKAWSVGIDDFEALKVVGQGAFAKVYQVRKKGTVDIYAMKVMRKDKIMEKNHAEYMKAERDILTKIEHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDADGHVMLTDFGLAKQFEENTRSNSMCGTVEYMAPEIVLGKGHDKAADWWSVGVLLFEMLTGKPPFTGNRVKVQQKIVKEKIKLPAFLSSEAHALLKALLQKDAMKRLGSGAMGSEEIKQHKWFKQINWKKLEARQIEPSFRPQVAGKHCVANFEKHWTDMPLVDSPVASPTAVGSHFIGFTYVRPAPAFLLAD 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9471323 9474230 - Conep19aG0150000.1 Cone19ag1459 459896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1459 478 FunFam Non-specific serine/threonine protein kinase 233 427 - -
Cone19ag1459 478 PANTHER RIBOSOMAL PROTEIN S6 KINASE 126 471 - -
Cone19ag1459 478 Pfam Protein kinase domain 154 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1459 478 SUPERFAMILY Protein kinase-like (PK-like) 150 466 IPR011009 -
Cone19ag1459 478 CDD STKc_AGC 159 408 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Cone19ag1459 478 Gene3D Transferase(Phosphotransferase) domain 1 233 427 - -
Cone19ag1459 478 Gene3D Phosphorylase Kinase; domain 1 150 448 - -
Cone19ag1459 478 SMART serkin_6 153 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1459 478 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524(InterPro)
Cone19ag1459 478 SMART pkinase_C_6 409 469 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1459 478 FunFam Non-specific serine/threonine protein kinase 150 255 - -
Cone19ag1459 478 Pfam Protein kinase C terminal domain 430 467 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1459 478 ProSiteProfiles Protein kinase domain profile. 153 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1459 478 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 477 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone19ag1459 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0110 Cone-Chr19:615318 Cone19ag1459 Cone-Chr19:9471323 7.33E-167 dispersed
Cone19ag1459 Cone-Chr19:9471323 Cone2ag0776 Cone-Chr2:33726449 6.94E-65 dispersed
Cone13ag1455 Cone-Chr13:10406605 Cone19ag1459 Cone-Chr19:9471323 4.73E-39 transposed
Cone13ag1456 Cone-Chr13:10407120 Cone19ag1459 Cone-Chr19:9471323 1.16E-13 transposed
Cone13ag1454 Cone-Chr13:10406204 Cone19ag1459 Cone-Chr19:9471323 2.20E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82436 PF15996 PNISR 1.80E-09 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1459 K04688 - mdm:103433768 709.909