Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag1461 ATGGAAGCCACTGATAGCGATCCGGACGCTTACAGAGCTGCTTCCACGAGCGCTACTTCCAGAAGATACGTAATGCTTTCTGCTTCCAATATAATTCACGCACCACTGTCGGCCCTGCTGGAGTATTCCGGTCTTCTACGTGGCCGTTCGAGTCACCAAGAAGCAGAGACGTTGATGAATGGACGTGTAACTCCAGGTGGGTTTCAGGATCAACTTCGCAGCCACCTCGAGGAATCTACATCCCCATCCAATGAAGGCGAGGTTTCAATTAGGATCAGTGGTGCAGGGGAACAAGAACATGACCGGGAAGCTCAGAATGAGGTTCCACCATCACTAGTGCCAGGGATGACCTCTGCTTCATTGGCTTCCGAACGGGGTGATACCTGGAATGATCATGGTGTAGGAGATGGCATTTCCCAGTCATTGAATGGAGGTCCTGATGGAGAAGCACTAGATGGAGCAAGGCCAAATGGCAGGGACTCTTCTTATCGAAGGTACGATATTCAGCAGGCCGCTAGGTGGATTGAGCAGGTCCTGCCCTTTACTTTGCTTTTGTTGGTAGTCTTCATCCGACAGCACTTGCAAGGTTTCTTTGTTACAATTTGGATTGCAGCCTTCATGTTTAAGTCCAACGATATTCTTCGGAAACAAACGGCTCTAAAGGGTGAGAGGAAAATCACTGTTTTAATTGGCATTTCTGTTGCATTCACAATTCACGTGATTGGTATTTACTGGTGGTATCAGAATGATGATCTTTTATACCCATTGGTCATGCTCCCTCCCCGAAGTATACCTCCATTTTGGCATGCTATTTTCATTATCATGTTGAATGATACTTTGGTCAGGCAGGCAGCAATGATATTCAAATGTATTCTATTAATGTATTACAAGAACAGCAGAGGGCGCAATTATCGTAAACAGGGTCAAATGCTGACTTTACTCGAGTATTTTCTACTATTGTACCGTGCTTTGCTTCCTACGCCAGTCTGGTACCGTTTCTTCTTGAACAAAGAATATGGGAGCTTGTTCTCATCACTGATGACGGGGCTTTATTTGACTTTTAAGCTAACATCTATTGTTGAAAAGGTGCAAGCCTTCTTTGCAGCACTGAAGGCATTATCACGTAAAGAGGTGCATTATGGGGCTTATGCAACATCAGAGCAGGTAGATCAGGTTAATGCAGCCGGTGATCTGTGTGCTATTTGCCAGGAGAAGATGCATGCCCCTATCTTGCTTCGTTGTAAACACATCTTTTGTGAGGATTGTGTCTCGGAATGGTTTGAGAGAGAAAGGACATGCCCATTGTGCAGGGCTTTGGTCAAACCTGCAGATCTCAGATCATTTGGCGATGGATCAACGAGTCTGTTTTTCCAATTGTTCTAA 1383 45.41 MEATDSDPDAYRAASTSATSRRYVMLSASNIIHAPLSALLEYSGLLRGRSSHQEAETLMNGRVTPGGFQDQLRSHLEESTSPSNEGEVSIRISGAGEQEHDREAQNEVPPSLVPGMTSASLASERGDTWNDHGVGDGISQSLNGGPDGEALDGARPNGRDSSYRRYDIQQAARWIEQVLPFTLLLLVVFIRQHLQGFFVTIWIAAFMFKSNDILRKQTALKGERKITVLIGISVAFTIHVIGIYWWYQNDDLLYPLVMLPPRSIPPFWHAIFIIMLNDTLVRQAAMIFKCILLMYYKNSRGRNYRKQGQMLTLLEYFLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSIVEKVQAFFAALKALSRKEVHYGAYATSEQVDQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 9490476 9495339 + Conep19aG0150200.1 Cone19ag1461 459898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag1461 460 SMART ring_2 399 436 IPR001841 -
Cone19ag1461 460 MobiDBLite consensus disorder prediction 73 88 - -
Cone19ag1461 460 MobiDBLite consensus disorder prediction 134 159 - -
Cone19ag1461 460 ProSiteProfiles Zinc finger RING-type profile. 399 437 IPR001841 -
Cone19ag1461 460 Pfam Ring finger domain 398 437 IPR001841 -
Cone19ag1461 460 CDD RING-HC_RNFT1-like 397 437 - -
Cone19ag1461 460 MobiDBLite consensus disorder prediction 95 114 - -
Cone19ag1461 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 447 IPR013083 -
Cone19ag1461 460 SUPERFAMILY RING/U-box 392 442 - -
Cone19ag1461 460 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 460 IPR044235 GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro)
Cone19ag1461 460 MobiDBLite consensus disorder prediction 61 88 - -
Cone19ag1461 460 ProSitePatterns Zinc finger RING-type signature. 414 423 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1461 Cone-Chr19:9490476 Cone1ag1598 Cone-Chr1:57571891 2.03E-187 dispersed
Cone19ag1461 Cone-Chr19:9490476 Cone5ag0120 Cone-Chr5:543484 2.47E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag1461 - - - 0.0