Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0006 ATGTCTTGCTCCAATTTGACTACGTGGATGTACTCCAAACCCTCCCTCTCCGACTCCTCGCCCCTCTCTTTCCGTTCTTTTCTCAACCCTTTTCAGCTTCCCTACCACACTGTCTACCAGTCGCGGTCCTCAGCGGTAACCCCTATTCAGTGTGGACTCCGCGAGCTCCGAGAAAGAATTGGTTCCGTAAAGAATACCCAGAAGATAACGGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGAAGAGCTCAAGAAGCTGTTGTCAACGGACGACCCTTCTCCGAAACTCTGGTTGAAGTTCTTTACAACATCAATGAGCAGGTCCAGACCGATGACGTGGATGTTCCCCTCACAAAGGTCAGGCCGGTCAAGAAGATTGCCCTGGTTGTAGTCACGGGTGATCGTGGTCTTTGCGGCGGCTTCAACAACTATATCATCAAAAAGGCAGAGGCAAGAATTGCAGAATTGAAGGGGCTTGGTGTTGCTTACACTGTGATTAGTGTTGGCAAGAAAGGTAACTCATATTTCCTTAGGCGGCCTTATATTCCGGTGGATAGATTTCTGGAGGGTGGGAACCTTCCAACCGCTAAAGAAGCTCAAGCCATTGCGGATGATGTATTCTCCCTCTTTGTGAGTGAAGATGTGGACAAGGTGGAGCTCTTGTACACCAAATTCGTGTCCTTGGTCAAGTCGGATCCGGTGATTCACACATTACTTCCGCTCTCACCAAAGGGGGAGATCTGCGATTTGAATGGTAATTGCGTGGATGCTGCTGACGACGAGCTCTTCAGGTTGACCACAAAGGAAGGGAAGTTGACTGTGGAGAGGGACACCATGAGGACAGCCACGGTTGACTTCTCGCCAATATTGGAGTTCGAGCAAGACCCGGCTCAGATACTCGATGCTCTGCTACCTCTGTATTTAAACAGCCAGATATTGAGGGCATTGCAAGAATCACTGGCCAGTGAGCTGGCTGCAAGGATGAGCGCTATGAGCAATGCAACTGACAATGCAATTGAGTTGAAGAAGAACTTGTCGAGGGCCTACAATAGACAACGCCAGGCTAAAATCACCGGCGAGATTTTGGAGATTGTTGCCGGAGCTAACGCTTTAGTCTAG 1122 49.47 MSCSNLTTWMYSKPSLSDSSPLSFRSFLNPFQLPYHTVYQSRSSAVTPIQCGLRELRERIGSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQVQTDDVDVPLTKVRPVKKIALVVVTGDRGLCGGFNNYIIKKAEARIAELKGLGVAYTVISVGKKGNSYFLRRPYIPVDRFLEGGNLPTAKEAQAIADDVFSLFVSEDVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDLNGNCVDAADDELFRLTTKEGKLTVERDTMRTATVDFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNAIELKKNLSRAYNRQRQAKITGEILEIVAGANALV 373
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 78278 80422 + Conep01aG0000600.1 Cone1ag0006 430697
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0006 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1 372 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cone1ag0006 373 FunFam ATP synthase gamma chain, chloroplastic 120 243 - -
Cone1ag0006 373 Hamap ATP synthase gamma chain [atpG]. 50 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 FunFam ATP synthase gamma chain, chloroplastic 51 118 - -
Cone1ag0006 373 Coils Coil 332 352 - -
Cone1ag0006 373 FunFam ATP synthase gamma chain, chloroplastic 269 372 - -
Cone1ag0006 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 267 372 - -
Cone1ag0006 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 51 119 - -
Cone1ag0006 373 Gene3D - 120 243 - -
Cone1ag0006 373 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 52 372 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 PRINTS ATP synthase gamma subunit signature 319 338 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 PRINTS ATP synthase gamma subunit signature 124 143 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 PRINTS ATP synthase gamma subunit signature 350 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 PRINTS ATP synthase gamma subunit signature 217 234 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 NCBIfam ATP synthase F1 subunit gamma 52 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 Pfam ATP synthase 53 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cone1ag0006 373 ProSitePatterns ATP synthase gamma subunit signature. 358 371 IPR023632 -
Cone1ag0006 373 CDD F1-ATPase_gamma 53 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0006 Cone-Chr1:78278 Cone6ag1091 Cone-Chr6:6652794 1.30E-194 dispersed
Cone1ag0006 Cone-Chr1:78278 Cone5ag1860 Cone-Chr5:13031201 1.13E-235 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0006 K02115 - csv:101214408 613.609