Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag0006 | ATGTCTTGCTCCAATTTGACTACGTGGATGTACTCCAAACCCTCCCTCTCCGACTCCTCGCCCCTCTCTTTCCGTTCTTTTCTCAACCCTTTTCAGCTTCCCTACCACACTGTCTACCAGTCGCGGTCCTCAGCGGTAACCCCTATTCAGTGTGGACTCCGCGAGCTCCGAGAAAGAATTGGTTCCGTAAAGAATACCCAGAAGATAACGGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGAAGAGCTCAAGAAGCTGTTGTCAACGGACGACCCTTCTCCGAAACTCTGGTTGAAGTTCTTTACAACATCAATGAGCAGGTCCAGACCGATGACGTGGATGTTCCCCTCACAAAGGTCAGGCCGGTCAAGAAGATTGCCCTGGTTGTAGTCACGGGTGATCGTGGTCTTTGCGGCGGCTTCAACAACTATATCATCAAAAAGGCAGAGGCAAGAATTGCAGAATTGAAGGGGCTTGGTGTTGCTTACACTGTGATTAGTGTTGGCAAGAAAGGTAACTCATATTTCCTTAGGCGGCCTTATATTCCGGTGGATAGATTTCTGGAGGGTGGGAACCTTCCAACCGCTAAAGAAGCTCAAGCCATTGCGGATGATGTATTCTCCCTCTTTGTGAGTGAAGATGTGGACAAGGTGGAGCTCTTGTACACCAAATTCGTGTCCTTGGTCAAGTCGGATCCGGTGATTCACACATTACTTCCGCTCTCACCAAAGGGGGAGATCTGCGATTTGAATGGTAATTGCGTGGATGCTGCTGACGACGAGCTCTTCAGGTTGACCACAAAGGAAGGGAAGTTGACTGTGGAGAGGGACACCATGAGGACAGCCACGGTTGACTTCTCGCCAATATTGGAGTTCGAGCAAGACCCGGCTCAGATACTCGATGCTCTGCTACCTCTGTATTTAAACAGCCAGATATTGAGGGCATTGCAAGAATCACTGGCCAGTGAGCTGGCTGCAAGGATGAGCGCTATGAGCAATGCAACTGACAATGCAATTGAGTTGAAGAAGAACTTGTCGAGGGCCTACAATAGACAACGCCAGGCTAAAATCACCGGCGAGATTTTGGAGATTGTTGCCGGAGCTAACGCTTTAGTCTAG | 1122 | 49.47 | MSCSNLTTWMYSKPSLSDSSPLSFRSFLNPFQLPYHTVYQSRSSAVTPIQCGLRELRERIGSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQVQTDDVDVPLTKVRPVKKIALVVVTGDRGLCGGFNNYIIKKAEARIAELKGLGVAYTVISVGKKGNSYFLRRPYIPVDRFLEGGNLPTAKEAQAIADDVFSLFVSEDVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDLNGNCVDAADDELFRLTTKEGKLTVERDTMRTATVDFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNAIELKKNLSRAYNRQRQAKITGEILEIVAGANALV | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 78278 | 80422 | + | Conep01aG0000600.1 | Cone1ag0006 | 430697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag0006 | 373 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 372 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
| Cone1ag0006 | 373 | FunFam | ATP synthase gamma chain, chloroplastic | 120 | 243 | - | - | |
| Cone1ag0006 | 373 | Hamap | ATP synthase gamma chain [atpG]. | 50 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | FunFam | ATP synthase gamma chain, chloroplastic | 51 | 118 | - | - | |
| Cone1ag0006 | 373 | Coils | Coil | 332 | 352 | - | - | |
| Cone1ag0006 | 373 | FunFam | ATP synthase gamma chain, chloroplastic | 269 | 372 | - | - | |
| Cone1ag0006 | 373 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 267 | 372 | - | - | |
| Cone1ag0006 | 373 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 51 | 119 | - | - | |
| Cone1ag0006 | 373 | Gene3D | - | 120 | 243 | - | - | |
| Cone1ag0006 | 373 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 52 | 372 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | PRINTS | ATP synthase gamma subunit signature | 319 | 338 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | PRINTS | ATP synthase gamma subunit signature | 124 | 143 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | PRINTS | ATP synthase gamma subunit signature | 350 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | PRINTS | ATP synthase gamma subunit signature | 217 | 234 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | NCBIfam | ATP synthase F1 subunit gamma | 52 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | Pfam | ATP synthase | 53 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Cone1ag0006 | 373 | ProSitePatterns | ATP synthase gamma subunit signature. | 358 | 371 | IPR023632 | - | |
| Cone1ag0006 | 373 | CDD | F1-ATPase_gamma | 53 | 369 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0006 | Cone-Chr1:78278 | Cone6ag1091 | Cone-Chr6:6652794 | 1.30E-194 | dispersed | |
| Cone1ag0006 | Cone-Chr1:78278 | Cone5ag1860 | Cone-Chr5:13031201 | 1.13E-235 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag0006 | K02115 | - | csv:101214408 | 613.609 |