Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0022 ATGGATCGGAATGGATCATCCGAAGAAGAGGTCGATGTGAACAACCATTCTGTTGATCCTCAAGCAGAAGAAAGAGAGCTGAAAGGTCAGCTTCTGCGCAAGTACAGTGGATATTTGGGCAGTCTGAAGCAGGAATTTATGAAGAAGAGGAAGAAAGGAAAGCTGCCCAAGGAAGCTAGGCAGCAATTGCTTGATTGGTGGAGCCGCCATTATAAATGGCCTTATCCCTCGGAATCACAGAAGCTAGCCCTTGCAGAATCGACTGGCCTGGATCAGAAGCAGATAAACAACTGGTTTATCAACCAAAGGAAAAGACACTGGAAGCCGTCGGAAGATATGCAGTTTGTGGTGATGGATGCTACTCATCCCAGCCAGTGTTACATGGACAGTGTGCTTGGAAACCCGTTTCCTTTGGATATCTCTCACACCCTCCTCTAA 438 47.03 MDRNGSSEEEVDVNNHSVDPQAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPSQCYMDSVLGNPFPLDISHTLL 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 159153 159681 - Conep01aG0002300.1 Cone1ag0022 430713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0022 145 ProSiteProfiles ELK domain profile. 26 46 IPR005539 GO:0003677(InterPro)
Cone1ag0022 145 ProSiteProfiles 'Homeobox' domain profile. 46 109 IPR001356 GO:0003677(InterPro)
Cone1ag0022 145 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 116 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone1ag0022 145 SMART ELK_2 26 47 IPR005539 GO:0003677(InterPro)
Cone1ag0022 145 CDD homeodomain 58 110 IPR001356 GO:0003677(InterPro)
Cone1ag0022 145 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone1ag0022 145 SUPERFAMILY Homeodomain-like 48 123 IPR009057 -
Cone1ag0022 145 Pfam Homeobox KN domain 66 105 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag0022 145 Gene3D - 44 116 - -
Cone1ag0022 145 SMART HOX_1 48 113 IPR001356 GO:0003677(InterPro)
Cone1ag0022 145 MobiDBLite consensus disorder prediction 1 28 - -
Cone1ag0022 145 FunFam Homeobox protein knotted-1-like 2 51 113 - -
Cone1ag0022 145 Pfam ELK domain 26 47 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0022 Cone-Chr1:159153 Cone4ag1642 Cone-Chr4:12394528 9.16E-60 dispersed
Cone1ag0022 Cone-Chr1:159153 Cone3ag1319 Cone-Chr3:32124771 7.19E-73 wgd
Cone1ag0022 Cone-Chr1:159153 Cone5ag1845 Cone-Chr5:12953241 9.76E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45387 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0022 - - - 0.0