Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0045 ATGCAAGAGATTGACCCCTACTATCTATCTCATTTCCAAATATCACCAAATAACATGTGCCCTGAAAATAGCAGCCATGGTGCTGCCAACCTTTCTTTTCACCACCACTCCTACAAGGAAAACTTCTTCACTCTAGACTCGACTCCTCCAATAGCTTCCCATTTTGTTGTCTGTGACTCTTCTTCTAATGGCAGTGTTTTGTCCGATATGAGTCCGATTTCACCTCAAGAAGGCTCTCAGACCTGTTCCTCGGATCCACAACCTTGCTCTGATCCCACTTATGGGTCCCCCATAAGTGGCTGCTCTGTTGCAGACGAAGACAATGGGTGGAAGAACAAACTCCGTGAGCTCGAAAATACCTTATTTGAGCCTGAAATGAATGTTAGTGACGGGTGTTATTGTTCGTACCGGAATTGCACCCATCAAGCCACTTCTAATGCGAAATGGGATTGGAATCAGATTCAAGAAGTGATCCCCAGGTTGAATTTAAATGAAGTGCTTGTCAAATGCGCAAATGCAGTTTATGAGGAGGATTTATCAACTGCCACATTTTTCATTGAAGTTTTGGAACGGATGGTGTCTGTTTCTGGGGACCCGGTCCAACGGTTGGGAGCTTACTTGTTAGAAGGGCTTAGAGCGAGGTTGGAAAGATCAGGAAGCTCCATCTACAAAGCCCTAAAGTGCGAAGAACCCACTGGCCTGGAGCTAATGTCTTACATGTCCATCCTTTACCTGACATGCCCCTATTGGCAATTCGCCTACACTTCGGCAAACATAGTCATAAAAGAAGCTATGGGAAATGAATCTCGAATCCACATCATCGATTTCCAAATTGCTCAGGGCAGTCAGTGGGCTCTCCTCATCCCGGAACTAGCCAAACGGTGTGGTGGGCCTCCGGCAATTAGAATCACCGGTGTTGATGACTCCCAGTCGGCTCATGCTCGAGGTGGAGGGCTCGAGATGGTAGGTCGGAGGCTATCAGATATCGCCAAGTCACATGGCGTCCCCTTTGAATTCCATGCGGCCCCCATGATTGGGTTTCGAGTCGAACCACATCACCTCGGGGTTCGACCCGGAGAAGCCATAGCCGTTAATTTCCCGTACGTGTTGCATCACATGCCAGACGAGAGCGTGAGCACAGACAATCATAGAGACCGGTTATTACGGCTCGTGAAAAGCCTCTCGCCTAAAGTGGTAACCCTGGGGGAGCAAGAATCGAACACAAACACTTCCCCATTTATGATGCGATTCGTCGAGATGTTGGAATACTACACAGCTATGTTTGAGTCGATAGATGCAGGGTCCGTGAAAGATGAGAGGCAGAGGATCAAGGCGGAGCAGAATTGCGTGGCTCGGGATATAGTGAACATGATAGCTTGTGAAGGGTCTGAAAGGGTCGAGAGACATGAGCCTCTTTTTAAGTGGAGGTTCAGGTTAATAAGTGCTGGGTTTAGTCCGTGCCCATTGAGTTGCAAGGTAATCAAGGCTGTTCGGGAATTGCTATCCAAGTTCAGCGAGAAGTACTGGGTTAGGGAAAGTGATGGGGCTCTTTATCTTGGTTGGATGAATAGAGCTATGGCTACATCTTCCGCTTGGAGATAG 1602 47.94 MQEIDPYYLSHFQISPNNMCPENSSHGAANLSFHHHSYKENFFTLDSTPPIASHFVVCDSSSNGSVLSDMSPISPQEGSQTCSSDPQPCSDPTYGSPISGCSVADEDNGWKNKLRELENTLFEPEMNVSDGCYCSYRNCTHQATSNAKWDWNQIQEVIPRLNLNEVLVKCANAVYEEDLSTATFFIEVLERMVSVSGDPVQRLGAYLLEGLRARLERSGSSIYKALKCEEPTGLELMSYMSILYLTCPYWQFAYTSANIVIKEAMGNESRIHIIDFQIAQGSQWALLIPELAKRCGGPPAIRITGVDDSQSAHARGGGLEMVGRRLSDIAKSHGVPFEFHAAPMIGFRVEPHHLGVRPGEAIAVNFPYVLHHMPDESVSTDNHRDRLLRLVKSLSPKVVTLGEQESNTNTSPFMMRFVEMLEYYTAMFESIDAGSVKDERQRIKAEQNCVARDIVNMIACEGSERVERHEPLFKWRFRLISAGFSPCPLSCKVIKAVRELLSKFSEKYWVRESDGALYLGWMNRAMATSSAWR 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 251397 254448 - Conep01aG0004800.1 Cone1ag0045 430736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0045 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 532 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone1ag0045 533 Pfam GRAS domain family 164 533 IPR005202 -
Cone1ag0045 533 ProSiteProfiles GRAS family profile. 154 533 IPR005202 -
Cone1ag0045 533 MobiDBLite consensus disorder prediction 68 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0045 Cone-Chr1:251397 Cone9ag0110 Cone-Chr9:478390 8.37E-137 dispersed
Cone1ag0045 Cone-Chr1:251397 Cone14ag1207 Cone-Chr14:9818414 2.16E-147 wgd
Cone1ag0045 Cone-Chr1:251397 Cone3ag1294 Cone-Chr3:31806914 2.50E-173 wgd
Cone1ag0045 Cone-Chr1:251397 Cone5ag1816 Cone-Chr5:12832470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45390 PF13561 adh_short_C2 4.10E-60 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0045 K27748 - csv:101207883 672.93