Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0062 ATGGAGCGCAGAGACCTCCATTGCTATAGCAAGATCCCCAACTCGAGCTCTGGGCTGAAGCTGTCTGAACTGGACATCAACAGCAACTGCAGCAACCACACAACACCGGAACATGAAAATAACGAGTGCACGGTGAGAGAACAAGACCGGTTCATGCCAATAGCGAACGTGATAAGGATCATGCGAAAGATACTCCCTCCTCATGCAAAAATCTCGGACGATGCAAAGGAAACGATCCAAGAATGCGTATCAGAATACATCAGCTTCATAACTGGCGAAGCCAACGAGCGGTGCCAGGGTGAGCAACGGAAAACAATAACGGCCGAAGATGTTCTGTGGGCCATGAGCAAGCTCGGTTTCGATGACTATATTGAGCCACTTACTGTTTACCTGCATCGGTACCGGGAAATGGAGGGTGATCGGGCGGGGTCCATGAGGGGTGGTACTGCAGATCATCATCATCACCAGTTGGCGAAACGGATGGTGGATCATGCTGGTGGTCCGTTCGGTGTGGGTCATGTATATGGTACTGCACCAAATGGGTTTTTAGCGCATCACCATGGCTTTCTCGGGTTTCTGAAGGATGCATCTTCAAATGCCGGTGGTAGCAGTGGTGGTTCTCCTCAGGCTGCCATTGTAAATGGTGAACCGTATGCCTCACAGTCGTTTAAGTGA 675 50.52 MERRDLHCYSKIPNSSSGLKLSELDINSNCSNHTTPEHENNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQGEQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGDRAGSMRGGTADHHHHQLAKRMVDHAGGPFGVGHVYGTAPNGFLAHHHGFLGFLKDASSNAGGSSGGSPQAAIVNGEPYASQSFK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 313120 314606 + Conep01aG0006500.1 Cone1ag0062 430753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0062 224 FunFam Nuclear transcription factor Y subunit B-6 40 156 - -
Cone1ag0062 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Cone1ag0062 224 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Cone1ag0062 224 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cone1ag0062 224 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cone1ag0062 224 SUPERFAMILY Histone-fold 48 146 IPR009072 GO:0046982(InterPro)
Cone1ag0062 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 33 157 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone1ag0062 224 MobiDBLite consensus disorder prediction 200 224 - -
Cone1ag0062 224 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0062 224 Gene3D Histone, subunit A 38 164 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0062 Cone-Chr1:313120 Cone3ag0290 Cone-Chr3:1505735 9.61E-49 dispersed
Cone1ag0062 Cone-Chr1:313120 Cone14ag1217 Cone-Chr14:9905417 1.71E-45 wgd
Cone1ag0062 Cone-Chr1:313120 Cone5ag1798 Cone-Chr5:12749061 9.65E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45393 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0062 K08065 - gmx:100194424 245.743