Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0062 | ATGGAGCGCAGAGACCTCCATTGCTATAGCAAGATCCCCAACTCGAGCTCTGGGCTGAAGCTGTCTGAACTGGACATCAACAGCAACTGCAGCAACCACACAACACCGGAACATGAAAATAACGAGTGCACGGTGAGAGAACAAGACCGGTTCATGCCAATAGCGAACGTGATAAGGATCATGCGAAAGATACTCCCTCCTCATGCAAAAATCTCGGACGATGCAAAGGAAACGATCCAAGAATGCGTATCAGAATACATCAGCTTCATAACTGGCGAAGCCAACGAGCGGTGCCAGGGTGAGCAACGGAAAACAATAACGGCCGAAGATGTTCTGTGGGCCATGAGCAAGCTCGGTTTCGATGACTATATTGAGCCACTTACTGTTTACCTGCATCGGTACCGGGAAATGGAGGGTGATCGGGCGGGGTCCATGAGGGGTGGTACTGCAGATCATCATCATCACCAGTTGGCGAAACGGATGGTGGATCATGCTGGTGGTCCGTTCGGTGTGGGTCATGTATATGGTACTGCACCAAATGGGTTTTTAGCGCATCACCATGGCTTTCTCGGGTTTCTGAAGGATGCATCTTCAAATGCCGGTGGTAGCAGTGGTGGTTCTCCTCAGGCTGCCATTGTAAATGGTGAACCGTATGCCTCACAGTCGTTTAAGTGA | 675 | 50.52 | MERRDLHCYSKIPNSSSGLKLSELDINSNCSNHTTPEHENNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQGEQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYREMEGDRAGSMRGGTADHHHHQLAKRMVDHAGGPFGVGHVYGTAPNGFLAHHHGFLGFLKDASSNAGGSSGGSPQAAIVNGEPYASQSFK | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 313120 | 314606 | + | Conep01aG0006500.1 | Cone1ag0062 | 430753 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0062 | 224 | FunFam | Nuclear transcription factor Y subunit B-6 | 40 | 156 | - | - | |
Cone1ag0062 | 224 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 51 | 115 | IPR003958 | - | |
Cone1ag0062 | 224 | PRINTS | CCAAT-binding transcription factor subunit A signature | 117 | 135 | - | - | |
Cone1ag0062 | 224 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - | |
Cone1ag0062 | 224 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
Cone1ag0062 | 224 | SUPERFAMILY | Histone-fold | 48 | 146 | IPR009072 | GO:0046982(InterPro) | |
Cone1ag0062 | 224 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 33 | 157 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone1ag0062 | 224 | MobiDBLite | consensus disorder prediction | 200 | 224 | - | - | |
Cone1ag0062 | 224 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 82 | 98 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone1ag0062 | 224 | Gene3D | Histone, subunit A | 38 | 164 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0062 | Cone-Chr1:313120 | Cone3ag0290 | Cone-Chr3:1505735 | 9.61E-49 | dispersed | |
Cone1ag0062 | Cone-Chr1:313120 | Cone14ag1217 | Cone-Chr14:9905417 | 1.71E-45 | wgd | |
Cone1ag0062 | Cone-Chr1:313120 | Cone5ag1798 | Cone-Chr5:12749061 | 9.65E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45393 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0062 | K08065 | - | gmx:100194424 | 245.743 |