Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0088 ATGTTTCAACAAAAGGGTGTTCCTGATTCAAGCTTAAGACAGAACAACTCACTAGTTCATGATCATTATCTAGATTCTTCCGACACTTCAATGGACCACGTGAACGGAGGTAACAATTCCAATCTTGCCTCGAAGCAGCGGCTAAGATGGACCCACGAGCTTCATGAACGTTTTATTGATGCAGTGGCACAGCTTGGTGGGCCAGATCGGGCTACACCCAAAGGTGTCCTTAGAGTAATGGGTGTTCAAGGGCTAACAATATATCATGTGAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTTCCAGACTCCTCTTCTGATGGGAAAAAAACTGACAAGAAAGAGTCGGGGGATTCCCTTTCAAATGTGGATGGTTCATCGGGAATGCAAATCACTGAAGCTCTGAAGCTGCAGATGGAGGTGCAAAAGCGTCTTCATGAACAATTAGAGGTGCAAAGACAGCTGCAATTACGTATAGAAGCACAGGGCAAGTACCTGAAGAAGATAATAGAAGAGCAACAAAGATTAAGTGGGGTCCTCTCGGAAGCTCCGTCTTCTGGCATATCACCTCCCAGTTCTGTTGAAAACTCTGATAAGACGGACCCAGCAACGCCTGCCCCAACCTCGGAATCCCCTCTTTTAGACAAGGTTGCCAAAGAACGGGCCCCACCCAAAAGCAGCGTTTCCATTGAGGATTCTTTCTCATCTCACCACGGACCATCGACCCCAGATTCCAGTTGCCATGTCAGCTCCCCAAGTGAGAGCCCCATAGAGGACCAGTCAATGAAGAAGCAGCGGTTAACTTTGGATGGAGCATATGCTAAACCCGACATGGGTGTTACTCACCACATACTAGAGTCAAGCTTAAGGTCCTCTTATCAGCAGCCGCAGCCACATTCTTTTTCTGAGTAG 918 46.84 MFQQKGVPDSSLRQNNSLVHDHYLDSSDTSMDHVNGGNNSNLASKQRLRWTHELHERFIDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKESGDSLSNVDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPSSGISPPSSVENSDKTDPATPAPTSESPLLDKVAKERAPPKSSVSIEDSFSSHHGPSTPDSSCHVSSPSESPIEDQSMKKQRLTLDGAYAKPDMGVTHHILESSLRSSYQQPQPHSFSE 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 450511 453531 + Conep01aG0009300.1 Cone1ag0088 430779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0088 305 MobiDBLite consensus disorder prediction 182 266 - -
Cone1ag0088 305 MobiDBLite consensus disorder prediction 230 260 - -
Cone1ag0088 305 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Cone1ag0088 305 Pfam MYB-CC type transfactor, LHEQLE motif 131 177 IPR025756 -
Cone1ag0088 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677(InterPro)
Cone1ag0088 305 MobiDBLite consensus disorder prediction 182 209 - -
Cone1ag0088 305 Coils Coil 134 154 - -
Cone1ag0088 305 MobiDBLite consensus disorder prediction 105 121 - -
Cone1ag0088 305 MobiDBLite consensus disorder prediction 104 129 - -
Cone1ag0088 305 Gene3D - 44 103 - -
Cone1ag0088 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Cone1ag0088 305 FunFam Myb family transcription factor 44 102 - -
Cone1ag0088 305 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Cone1ag0088 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 27 255 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0493 Cone-Chr10:2281175 Cone1ag0088 Cone-Chr1:450511 3.48E-52 dispersed
Cone1ag0088 Cone-Chr1:450511 Cone5ag1779 Cone-Chr5:12629516 6.49E-174 dispersed
Cone1ag0087 Cone-Chr1:446668 Cone1ag0088 Cone-Chr1:450511 2.43E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45396 PF05701 WEMBL 7.20E-31 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0088 - - - 0.0