Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0104 ATGGTAATGGCCTCAACATCACCATATTCAACACCACTTTTCTTCTTATTCTCTTTGATTCTCACAAACTTCATTCCCACCATAATTTCTCAGCCCAACTTCATTCTTAAGTCATGTCAATCGGAGAGCGGAAATTACACGACCAATAGTATTTACAAAGCCAATCTTGACTCCTTATTATCCTCTATCTCTTCCAATACTCAAATCGATTATGGCTTCTACAATTTCTCGGCCGGAGAAGAAACCAATAAGGTTAATGCCGTTGCTCTTTGCAGAGGAGATGTTAAGCTCGATAAATGTCGGAGTTGTGTCAACGACTCAACTTACGAACTTTTACAGATTTGTCCAAACCAAAAAGAAGCTGTTGGTTGGTACGACGATTGCATGTTAAGATACTCAAATAAATCCATCTTTGGTGTTAGAGATAATAGTATGGAGCTAGCTTTGTATAATGTTGAAAATGCTTCGGACATATCTGGGTTCAATACTGCATTGAGGTCATTATTAAGTAACTTAATAAGTAATGCATCTTCGGGGAGTTCTACTCTCAAGTTTGCAACAGGCGAAACGGATGCACCAAATTTTCAGACGATTTACGGACTTGTTCAATGCACTCCTGATTTATCGAGGTTAGATTGTAGTGATTGTTTAGATCAGGCTGCTGAGTTTATTCCTGGTTGTTGTGGCGGAAAGGTTGGAGGTAGAGTTGTGACACCTACTTGCAATTTACGGTACGAGGTTTATCGTTTCTATGATCCTAGTACGCCGCCGTCGCCGCCACCATCACCAGTGCCGGATACTGCTACACCACCTACCAAAGGAAAAAATAGTAACACAACTACAATTGCCATAGCCATTGCTGTGCCCACTGTTAGCTTGGTGCTACTCTTTCTCATTATTTGCTTCCTCTGTTCAAGAAAGAAGAAGAAGCAAAAGTCTCACAATCAACTATGGCAAACAGTTGAAAGTGAAGCATCTGAGGAGATTAGTACTTCGGAATCCTTGCAATTTGACTTCGAAACTATTAAGGCGGCAACTAATGACTTTCATAATGAAAATAAGCTCGGACAAGGCGGATTTGGAGCTGTTTATAAGGGTAGGCTACCTAATGGGAAATATATTGCTGTAAAAAGACTTGCTGCAAATTCAGGACAAGGAGATTTAGAATTTAAAAATGAGGTCTTGTTGGTGGCTAAGCTTCAACACAGAAACTTGGTTAGGCTCTTAGGATTCTGCCTCGAAAGAAGTGAAAGGCTACTTATTTATGAGTTTGTACCTAATGCAAGCCTTGATCACTTCCTTTTTGATCCAATGAAGCGTACCCTTTTAAATTGGGAAAGACGTTACAAGATTATAGGTGGAGTTGCTCGAGGACTTCTCTATCTACATGAAGATTCTCGACTTCGAATTATTCATCGTGATATGAAAGCTAGTAATGTTTTGTTGGATACGAATATGATACCTAAAATTTCTGACTTCGGAATGGCTAGATTATTTGTAATGGACGAGACTCAAGGCAACACTAACCGAATTGTTGGAACCTATGGTTATATGGCTCCAGAATATGCAATGTATGGACAATTTTCAATAAAGTCTGATGTCTTTAGCTTTGGCGTATTAATTTTAGAGATCGTCAGTGGTCAGAAAAATAATCATTTCCGTAACGGCGATAGCGTGGAGGATCTCTTAAGTTTTGCATGGAGGAATTGGCAGGAAGGAACGGTTTCGAATCTTATAGATCCAACACTAAGCACTGGCTCGAGAAATGAAATAATGAGGTGCATTCACATCGGGTTATTATGTGTACAAGAAAATGTAGGTGATAGACCAACCATGGCTTCTATTGTTCTAATGCTGAATAGCTCCTCTCTCATCCTCCCTGTTCCTCAAGAACCTGCATTTTTTATGCATAGCAACACTATTGATGAATCTTCAAAACTTGACCAAAGTTCAGATACCGTTTCACATTCAAGTCAGCATTCTAGAAGCAAACCTCATCAAGCTTCCCAGAATGAGGCTTCAATTACCGATCCCTATCCGCGTTGA 2046 39.74 MVMASTSPYSTPLFFLFSLILTNFIPTIISQPNFILKSCQSESGNYTTNSIYKANLDSLLSSISSNTQIDYGFYNFSAGEETNKVNAVALCRGDVKLDKCRSCVNDSTYELLQICPNQKEAVGWYDDCMLRYSNKSIFGVRDNSMELALYNVENASDISGFNTALRSLLSNLISNASSGSSTLKFATGETDAPNFQTIYGLVQCTPDLSRLDCSDCLDQAAEFIPGCCGGKVGGRVVTPTCNLRYEVYRFYDPSTPPSPPPSPVPDTATPPTKGKNSNTTTIAIAIAVPTVSLVLLFLIICFLCSRKKKKQKSHNQLWQTVESEASEEISTSESLQFDFETIKAATNDFHNENKLGQGGFGAVYKGRLPNGKYIAVKRLAANSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCLERSERLLIYEFVPNASLDHFLFDPMKRTLLNWERRYKIIGGVARGLLYLHEDSRLRIIHRDMKASNVLLDTNMIPKISDFGMARLFVMDETQGNTNRIVGTYGYMAPEYAMYGQFSIKSDVFSFGVLILEIVSGQKNNHFRNGDSVEDLLSFAWRNWQEGTVSNLIDPTLSTGSRNEIMRCIHIGLLCVQENVGDRPTMASIVLMLNSSSLILPVPQEPAFFMHSNTIDESSKLDQSSDTVSHSSQHSRSKPHQASQNEASITDPYPR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 547410 550980 + Conep01aG0011000.1 Cone1ag0104 430795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0104 681 Pfam Protein tyrosine and serine/threonine kinase 351 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0104 681 SUPERFAMILY Protein kinase-like (PK-like) 334 658 IPR011009 -
Cone1ag0104 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 101 635 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone1ag0104 681 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Cone1ag0104 681 Pfam Salt stress response/antifungal 154 247 IPR002902 -
Cone1ag0104 681 MobiDBLite consensus disorder prediction 253 268 - -
Cone1ag0104 681 SMART serkin_6 349 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0104 681 FunFam Cysteine-rich receptor-like protein kinase 10 145 250 - -
Cone1ag0104 681 Gene3D Phosphorylase Kinase; domain 1 307 424 - -
Cone1ag0104 681 CDD STKc_IRAK 355 620 - -
Cone1ag0104 681 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0104 681 Gene3D Transferase(Phosphotransferase) domain 1 425 625 - -
Cone1ag0104 681 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Cone1ag0104 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 137 - -
Cone1ag0104 681 ProSiteProfiles Gnk2-homologous domain profile. 34 137 IPR002902 -
Cone1ag0104 681 MobiDBLite consensus disorder prediction 252 275 - -
Cone1ag0104 681 FunFam Cysteine-rich receptor-like protein kinase 10 307 424 - -
Cone1ag0104 681 MobiDBLite consensus disorder prediction 645 681 - -
Cone1ag0104 681 Gene3D - 32 136 IPR038408 -
Cone1ag0104 681 Gene3D - 143 250 IPR038408 -
Cone1ag0104 681 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524(InterPro)
Cone1ag0104 681 FunFam Cysteine-rich receptor-like protein kinase 28 425 627 - -
Cone1ag0104 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1398 Cone-Chr12:10284460 Cone1ag0104 Cone-Chr1:547410 1.08E-46 dispersed
Cone1ag0104 Cone-Chr1:547410 Cone5ag1763 Cone-Chr5:12552587 7.06E-195 dispersed
Cone5ag1764 Cone-Chr5:12558378 Cone1ag0104 Cone-Chr1:547410 1.54E-50 dispersed
Cone8ag1453 Cone-Chr8:11225071 Cone1ag0104 Cone-Chr1:547410 1.04E-45 dispersed
Cone1ag0103 Cone-Chr1:541600 Cone1ag0104 Cone-Chr1:547410 2.78E-162 tandem
Cone1ag0104 Cone-Chr1:547410 Cone1ag0105 Cone-Chr1:555083 3.65E-298 tandem
Cone1ag0104 Cone-Chr1:547410 Cone3ag1358 Cone-Chr3:32592430 1.95E-21 wgd
Cone1ag0104 Cone-Chr1:547410 Cone3ag1358 Cone-Chr3:32592430 1.95E-21 wgd
Cone1ag0104 Cone-Chr1:547410 Cone5ag1762 Cone-Chr5:12547120 8.43E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82443 PF07002 Copine 9.50E-70 CL0128 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0104 - - - 0.0