Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0105 ATGTCCTCAATATCACCATATTCAACACCACTTTTCTTCTTATTCTCTTTGATTCTCACAAACTTCAAACCCACCATAATTTGTCAGCCCAACTTTATTCTTCAGTCATGTGGATCGGAGAGTGGAAATTACACCACCTACAGTACTTACGAAGCCAATCTTGACTCCTTGCTATCCTCTATCTCTTCCAATACTCAAATTGATTATGGCTTCTACAATTTCTCGACCGGAGAAGAATCCAATAAGGTTAATGCGATCGCTCTTTGCGAAGGAGATGTTAAGCCCGATAAATGTCGAAGTTGCATCAACGACTCAACTTACGAAATTCGACAGATATGTCCAAACCAAAAACAAGCTATTGGTTGGTACGACAAATGCATGTTAAGATACTCAGATGAATCCATTTTTGGTGTCAGAGATAATAGTATGACGCTAGCTTTGTATAATGTTAACAATGCTTCGGACATATCTGGGTTCAATACTGCATTGAGGTTACTGTTAAAAAATTTAACAAGGGAAGCATCTTCAGGGAGTTCTACCCTAAAGTTTGCAACTGGCGAAATGGATGCACCGAATTTTCAGACGATTTACGGACTTGTTCAATGCACTCCCGATTTGTCAAGCTTGGATTGTAGTGATTGTTTAGATCAGGCACTTCAGTTTATTCCTGGTTGTTGTGATGGAAAGGTTGGAGGTAGAATTGTGACACCTAGTTGTTATTTAAGGTACGAGGTTAATCGTTTCTACAATCCTAGTATACCGCTGCCACCGCCACCACCACTGCCACCGGCACCAGCACCAGTCTCGCCTACTAAAGGAAAAAATAGTAACACAACTACAATTGTCATAGCCATTGCTGTGCCCACTGTTAGCGTTGTGCTACTCTTCCTCATTATTTGCTTCCTCTGTTCAAGAAAGAAGAAGAAGCAAAAGCATCACAATCAACGAAGGCAAACAGTTGAAAGTGAAGAATCTGAGGAGATTAGTAATCCGGAATTCTTGGAATTTGACTTCGAAACTATTAAGGAAGCAACTAATGACTTTGATGATGAAAACAAGCTCGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTTCCGAATGGCCAAGAAGTAGCAGTGAAAAGGCTACGTATGAACTCGAGCCAAGGAAACGAAGAATTCAAGAACGAAGTCGTTTTACTTGCAAAACTCCAGCATCGGAATTTAATAAGGCTCTTAGGTTTCTGTCTAGAGAAAGAAGAAAGACTTCTCATTTATGAGTTTGCCCCAAACAATAGCCTTGATCACTTTCTCTTTGATTCAAAAAACCACACTTCTTTGGATTGGAGAAGGCGCTACAATATCATTAGAAGCATTGCTCGTGGCCTTCTCTACCTTCATGAAGAATCTCAGCTTAAAATTATTCATCGCGATCTTAAAGCCAGTAACATTTTGTTAGATGAGGAGATGAATCCAAAAATAGCAGATTTTGGGATGGCAAGATTGTTTGAAGTTGAACAAACTCGAGCCATTACGAAAAGAATTGTTGGGACTTTTGGATATATGGCTCCAGAGTATGCACGAGATGGTAGATTCTCAGAAAAGTCAGACATCTTCAGTTTTGGAGTTTTAGTTCTTGAGATTTTGACTGGTCTCAGCAACAACTCGATCCATGAAGACCAAAGTATCGTCCATCTTCCAACTTATGCGTGGGAAAATTGGAGAGAGGGCAAGGCTTCAAGTCTAATAGATCAAAAAATGAGGGGCAGTGGTTCAAGAGACGAAATGATGAGATGCATTCACATAGGCTTACTGTGCATTCAAGAAAGTGTAGAGACCAGGCCAACAATTAATCAAGTTGTTCTTTTGCTAACCAGTCACTCACAATTTCTTCCTCAACCTTCTAAACCTGGATTTTTCTTGCGTAGTACTAGCTGTGAGGGATCGCCACCGATCGGAAATCAACAACAAATTGTCGATGAACAACTGTCGGTAAATGACGTTACATTTAGTGAAGTTGGTATTGCTCGCTAG 2019 40.27 MSSISPYSTPLFFLFSLILTNFKPTIICQPNFILQSCGSESGNYTTYSTYEANLDSLLSSISSNTQIDYGFYNFSTGEESNKVNAIALCEGDVKPDKCRSCINDSTYEIRQICPNQKQAIGWYDKCMLRYSDESIFGVRDNSMTLALYNVNNASDISGFNTALRLLLKNLTREASSGSSTLKFATGEMDAPNFQTIYGLVQCTPDLSSLDCSDCLDQALQFIPGCCDGKVGGRIVTPSCYLRYEVNRFYNPSIPLPPPPPLPPAPAPVSPTKGKNSNTTTIVIAIAVPTVSVVLLFLIICFLCSRKKKKQKHHNQRRQTVESEESEEISNPEFLEFDFETIKEATNDFDDENKLGQGGFGAVYKGKLPNGQEVAVKRLRMNSSQGNEEFKNEVVLLAKLQHRNLIRLLGFCLEKEERLLIYEFAPNNSLDHFLFDSKNHTSLDWRRRYNIIRSIARGLLYLHEESQLKIIHRDLKASNILLDEEMNPKIADFGMARLFEVEQTRAITKRIVGTFGYMAPEYARDGRFSEKSDIFSFGVLVLEILTGLSNNSIHEDQSIVHLPTYAWENWREGKASSLIDQKMRGSGSRDEMMRCIHIGLLCIQESVETRPTINQVVLLLTSHSQFLPQPSKPGFFLRSTSCEGSPPIGNQQQIVDEQLSVNDVTFSEVGIAR 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 555083 580832 + Conep01aG0011100.1 Cone1ag0105 430796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0105 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0105 672 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 99 635 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone1ag0105 672 ProSiteProfiles Gnk2-homologous domain profile. 141 248 IPR002902 -
Cone1ag0105 672 FunFam Cysteine-rich receptor-like protein kinase 28 424 627 - -
Cone1ag0105 672 Gene3D Transferase(Phosphotransferase) domain 1 425 627 - -
Cone1ag0105 672 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524(InterPro)
Cone1ag0105 672 Gene3D Phosphorylase Kinase; domain 1 305 423 - -
Cone1ag0105 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 135 - -
Cone1ag0105 672 SUPERFAMILY Protein kinase-like (PK-like) 333 641 IPR011009 -
Cone1ag0105 672 FunFam Cysteine-rich receptor-like protein kinase 10 143 248 - -
Cone1ag0105 672 Gene3D - 30 134 IPR038408 -
Cone1ag0105 672 Gene3D - 140 248 IPR038408 -
Cone1ag0105 672 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Cone1ag0105 672 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Cone1ag0105 672 CDD STKc_IRAK 354 620 - -
Cone1ag0105 672 FunFam Cysteine-rich receptor-like protein kinase 10 306 423 - -
Cone1ag0105 672 Pfam Protein tyrosine and serine/threonine kinase 351 616 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0105 672 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Cone1ag0105 672 ProSiteProfiles Protein kinase domain profile. 348 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0105 672 SMART serkin_6 348 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0105 Cone-Chr1:555083 Cone5ag1763 Cone-Chr5:12552587 3.91E-249 dispersed
Cone3ag1358 Cone-Chr3:32592430 Cone1ag0105 Cone-Chr1:555083 2.75E-25 dispersed
Cone5ag1762 Cone-Chr5:12547120 Cone1ag0105 Cone-Chr1:555083 2.32E-45 dispersed
Cone1ag0104 Cone-Chr1:547410 Cone1ag0105 Cone-Chr1:555083 3.65E-298 tandem
Cone1ag0105 Cone-Chr1:555083 Cone1ag0106 Cone-Chr1:588706 6.45E-67 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82444 PF00332 Glyco_hydro_17 3.00E-64 CL0058 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0105 - - - 0.0