Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0107 ATGAGGTCGGAAAATACCAATTGGGTATTCGATTACGGGCCGATAGACGACGTTCATGGACGTGGCGGCGGTGAACTTTCTTCATTTGATATTCCTCCTCCTGATATTCCTCCTTTCGCTTGGCCTTCTCACTCTTTGGCCCCTCCTCCTCTTAGTGCAGAGTTCGATGACTGTATCGGGGATGCATATGGTTTTAAGGAAATCGGGTCCCGGAAAAGCATGAGTTCTGGATCAAGCAATGCATCCGGTTCAAAAGCATGTAGAGAGAAAATGCGCCGTGACAGACTAAATGACAGATTTTTGGAATTGAGTTCTGTCATTGATCCCGAGCGACCTGCGAAAACGGAAAAGTCGATCATCTTGAGTGATGCCGTCCTAATGATAACTCATCTTCGGGAAGAAGCTCAAAAACTGAAGGAGACGAATGATAACCTGCAGGGAAAGATAAATGAATTGAAGGTAGAGAAGAATGAGCTCCGGGACGAGAAACAGAGGCTAAAGGCTGAGAAAGAGAAGCTCGAACAACAAGTGAAGGGCATAAGTAGTTGTACCACTCATCCTAGCTTCTTCCCTCACCCCCCTCCTACAATTCTACCTCCATATTCCGGCCCGGGCCAAGTTCATGTTAATGGAAAGGTTGTACCTTTTACCGGGTATCCTGCAGGTGTTTCCATGTGGCAGTTTATGCCTCCGACAAGTGTCGACATCTCGATCGACCATGTTCTTCGCCCCCCTGTTGCCTAA 744 47.45 MRSENTNWVFDYGPIDDVHGRGGGELSSFDIPPPDIPPFAWPSHSLAPPPLSAEFDDCIGDAYGFKEIGSRKSMSSGSSNASGSKACREKMRRDRLNDRFLELSSVIDPERPAKTEKSIILSDAVLMITHLREEAQKLKETNDNLQGKINELKVEKNELRDEKQRLKAEKEKLEQQVKGISSCTTHPSFFPHPPPTILPPYSGPGQVHVNGKVVPFTGYPAGVSMWQFMPPTSVDISIDHVLRPPVA 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 591227 592874 - Conep01aG0011300.1 Cone1ag0107 430798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0107 247 SMART finulus 86 137 IPR011598 GO:0046983(InterPro)
Cone1ag0107 247 MobiDBLite consensus disorder prediction 69 90 - -
Cone1ag0107 247 PANTHER BHLH TRANSCRIPTION FACTOR 6 247 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cone1ag0107 247 Pfam Helix-loop-helix DNA-binding domain 84 132 IPR011598 GO:0046983(InterPro)
Cone1ag0107 247 Coils Coil 121 183 - -
Cone1ag0107 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 156 IPR036638 GO:0046983(InterPro)
Cone1ag0107 247 MobiDBLite consensus disorder prediction 71 85 - -
Cone1ag0107 247 Gene3D arf6 gtpase in complex with a specific effector, jip4 131 182 - -
Cone1ag0107 247 Gene3D - 73 130 IPR036638 GO:0046983(InterPro)
Cone1ag0107 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 131 IPR011598 GO:0046983(InterPro)
Cone1ag0107 247 CDD bHLH_AtILR3_like 85 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1137 Cone-Chr15:9236738 Cone1ag0107 Cone-Chr1:591227 2.29E-52 dispersed
Cone1ag0107 Cone-Chr1:591227 Cone7ag0314 Cone-Chr7:1366874 5.73E-25 dispersed
Cone1ag0107 Cone-Chr1:591227 Cone12ag1399 Cone-Chr12:10289289 1.78E-49 wgd
Cone1ag0107 Cone-Chr1:591227 Cone14ag1119 Cone-Chr14:9321339 1.06E-50 wgd
Cone1ag0107 Cone-Chr1:591227 Cone8ag1455 Cone-Chr8:11228658 3.50E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45397 PF10551 MULE 1.20E-21 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0107 - - - 0.0