Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0107 | ATGAGGTCGGAAAATACCAATTGGGTATTCGATTACGGGCCGATAGACGACGTTCATGGACGTGGCGGCGGTGAACTTTCTTCATTTGATATTCCTCCTCCTGATATTCCTCCTTTCGCTTGGCCTTCTCACTCTTTGGCCCCTCCTCCTCTTAGTGCAGAGTTCGATGACTGTATCGGGGATGCATATGGTTTTAAGGAAATCGGGTCCCGGAAAAGCATGAGTTCTGGATCAAGCAATGCATCCGGTTCAAAAGCATGTAGAGAGAAAATGCGCCGTGACAGACTAAATGACAGATTTTTGGAATTGAGTTCTGTCATTGATCCCGAGCGACCTGCGAAAACGGAAAAGTCGATCATCTTGAGTGATGCCGTCCTAATGATAACTCATCTTCGGGAAGAAGCTCAAAAACTGAAGGAGACGAATGATAACCTGCAGGGAAAGATAAATGAATTGAAGGTAGAGAAGAATGAGCTCCGGGACGAGAAACAGAGGCTAAAGGCTGAGAAAGAGAAGCTCGAACAACAAGTGAAGGGCATAAGTAGTTGTACCACTCATCCTAGCTTCTTCCCTCACCCCCCTCCTACAATTCTACCTCCATATTCCGGCCCGGGCCAAGTTCATGTTAATGGAAAGGTTGTACCTTTTACCGGGTATCCTGCAGGTGTTTCCATGTGGCAGTTTATGCCTCCGACAAGTGTCGACATCTCGATCGACCATGTTCTTCGCCCCCCTGTTGCCTAA | 744 | 47.45 | MRSENTNWVFDYGPIDDVHGRGGGELSSFDIPPPDIPPFAWPSHSLAPPPLSAEFDDCIGDAYGFKEIGSRKSMSSGSSNASGSKACREKMRRDRLNDRFLELSSVIDPERPAKTEKSIILSDAVLMITHLREEAQKLKETNDNLQGKINELKVEKNELRDEKQRLKAEKEKLEQQVKGISSCTTHPSFFPHPPPTILPPYSGPGQVHVNGKVVPFTGYPAGVSMWQFMPPTSVDISIDHVLRPPVA | 247 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 591227 | 592874 | - | Conep01aG0011300.1 | Cone1ag0107 | 430798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0107 | 247 | SMART | finulus | 86 | 137 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag0107 | 247 | MobiDBLite | consensus disorder prediction | 69 | 90 | - | - | |
Cone1ag0107 | 247 | PANTHER | BHLH TRANSCRIPTION FACTOR | 6 | 247 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Cone1ag0107 | 247 | Pfam | Helix-loop-helix DNA-binding domain | 84 | 132 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag0107 | 247 | Coils | Coil | 121 | 183 | - | - | |
Cone1ag0107 | 247 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 86 | 156 | IPR036638 | GO:0046983(InterPro) | |
Cone1ag0107 | 247 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
Cone1ag0107 | 247 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 131 | 182 | - | - | |
Cone1ag0107 | 247 | Gene3D | - | 73 | 130 | IPR036638 | GO:0046983(InterPro) | |
Cone1ag0107 | 247 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 80 | 131 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag0107 | 247 | CDD | bHLH_AtILR3_like | 85 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone15ag1137 | Cone-Chr15:9236738 | Cone1ag0107 | Cone-Chr1:591227 | 2.29E-52 | dispersed | |
Cone1ag0107 | Cone-Chr1:591227 | Cone7ag0314 | Cone-Chr7:1366874 | 5.73E-25 | dispersed | |
Cone1ag0107 | Cone-Chr1:591227 | Cone12ag1399 | Cone-Chr12:10289289 | 1.78E-49 | wgd | |
Cone1ag0107 | Cone-Chr1:591227 | Cone14ag1119 | Cone-Chr14:9321339 | 1.06E-50 | wgd | |
Cone1ag0107 | Cone-Chr1:591227 | Cone8ag1455 | Cone-Chr8:11228658 | 3.50E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45397 | PF10551 | MULE | 1.20E-21 | CL0219 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0107 | - | - | - | 0.0 |