Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0116 ATGGGAGAAGAAGGACCGAGTTCAGATATGACGGTAACTCACTTCCCTGATGATTTCAAGTGCCCGATTTCACTCGAGATAATGTCCGACCCGGTCATCCTCTCCTCCGGTCACACCTTCGACCGGCCCTCTATCCAACGCTGGCTCGATTCCGGCCACCGCACTTGTCCAATTACCAATGTACCCCTCCCGGAACAACCTTCCCTCATCCCTAACCACGCCCTGCGAAGCTTAATTTCCAATTATAACCTCCTCTCCCCGCCGAAATTACACCCCTACCATCCGGAACCTCAAATCCTAATCTCCACCCTAACTTCCCGCTCCTCGTCGCTCCAGGCCAAGCTCGACTCACTCAACCAACTCGCCCGCTTATCGAAGAGCGACTCGGCGTTTCGCCGGAAGCTGACCGAATCTGGAGCCGTCTCGGCAGTCCTCAAATGCGTCGGCTCGAAAGAGTCCAGCCTTCAAGAGAAATCGCTTTCACTGCTGCTAAATCTCAGCCTAGACGACGATAACAAAGTAGGTTTAGTCGCAGAAGGTGCAATCGGTCTCATCGTTGCCGTTCTACAAGGTCCTTCGCCGGACTTTCGTGCCGTCGCGGCCACGATGCTGACGAGCTTAGCCGTCGTTGAAGTCAACAAGGCCACAATCGGAGCTTACCCCTACGCGATTAGAGCTCTAGTTCTCCTCTTACAAAACGGTAAAGGTAGAGAGAAGAAAGAATCAGCTACCGCTCTCTACACGATCTGTTCCTTTCCTGAGAATCGCCGGAGAGTGGTAGAGTGTGGAGCCGTTCCGATTCTGATCAGAATCGCAGAATCAGGACTGGAAAGGGCGGTAGAGGTGCTCGGTCTGTTAGCGAAATGTAAGCAAGGGAGAGAAGAGATGGAGAGGGTTAATGGATTTGTTCGCATTTTGGTTCGGGTTTTGAAGAACGGGAATTCGAGAGGGGTTCAGTATGGATTGATGACATTGAATTCCATTTGTTGTTGTAGTGAGTTCATGTGTATGGAAGCTAGAAGAGAAGGGGTTCTAGAGATTTGTATGGGTTTGGTTGTCGATGACAATGAGAAGATCAGAAGAAATGCTTCCACTTTGATTCAGATTTTAAGTGGATCCAAGTTTAACTCTATGAGATGA 1140 50.18 MGEEGPSSDMTVTHFPDDFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDSGHRTCPITNVPLPEQPSLIPNHALRSLISNYNLLSPPKLHPYHPEPQILISTLTSRSSSLQAKLDSLNQLARLSKSDSAFRRKLTESGAVSAVLKCVGSKESSLQEKSLSLLLNLSLDDDNKVGLVAEGAIGLIVAVLQGPSPDFRAVAATMLTSLAVVEVNKATIGAYPYAIRALVLLLQNGKGREKKESATALYTICSFPENRRRVVECGAVPILIRIAESGLERAVEVLGLLAKCKQGREEMERVNGFVRILVRVLKNGNSRGVQYGLMTLNSICCCSEFMCMEARREGVLEICMGLVVDDNEKIRRNASTLIQILSGSKFNSMR 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 649753 651181 - Conep01aG0012200.1 Cone1ag0116 430807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0116 379 FunFam RING-type E3 ubiquitin transferase 14 85 - -
Cone1ag0116 379 SMART Ubox_2 18 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag0116 379 Pfam U-box domain 16 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag0116 379 Gene3D - 280 371 IPR011989 -
Cone1ag0116 379 SUPERFAMILY RING/U-box 4 82 - -
Cone1ag0116 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Cone1ag0116 379 SUPERFAMILY ARM repeat 98 373 IPR016024 -
Cone1ag0116 379 Gene3D - 98 220 IPR011989 -
Cone1ag0116 379 Gene3D - 221 279 IPR011989 -
Cone1ag0116 379 PANTHER U BOX DOMAIN-CONTAINING 16 371 - -
Cone1ag0116 379 SMART arm_5 169 209 IPR000225 GO:0005515(InterPro)
Cone1ag0116 379 SMART arm_5 128 168 IPR000225 GO:0005515(InterPro)
Cone1ag0116 379 SMART arm_5 289 330 IPR000225 GO:0005515(InterPro)
Cone1ag0116 379 SMART arm_5 252 288 IPR000225 GO:0005515(InterPro)
Cone1ag0116 379 SMART arm_5 331 372 IPR000225 GO:0005515(InterPro)
Cone1ag0116 379 ProSiteProfiles U-box domain profile. 14 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone1ag0116 379 CDD RING-Ubox_PUB 16 63 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0116 Cone-Chr1:649753 Cone5ag1640 Cone-Chr5:11573290 1.53E-32 dispersed
Cone1ag0116 Cone-Chr1:649753 Cone5ag1750 Cone-Chr5:12453767 2.47E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0116 K27970 - vvi:100852694 540.421