Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0131 ATGAATGATTTGTTCTCGAATTCGTTCCGTAAATATGCGGACCTCAAACAACAGGCATACCTAGACGACGTAGAAGCTGGGAAGGATAGCGTCAACCTTGACAAATTTTTCGAAGATGTCGAGCTTGTAAGAGAAGACATCAAACAAGTCGAGAAGCTCTACAAGAACCTACAAGAAGCCAATGCAGAAAGCAAAGTGGCCCACAATGGCAACACCATGAAAGAGGTGAGGTCTAGAATGGACTCCGATGTCGAAAAAGTCCTCAAACGGGTCAAACTCATCAAAGCCAAGCTCGAAGCTCTAGAAATGTCCAATGCCGCCCACCGTAGCCTCCCCGGTTGTGGGCCAGGCTCGTCTGCTGATCGAACCCGAACGTCAGTCGTAAGCGGGGTCGGGAAAAAGCTCAAAGACATGATGGACGATTTCCAGGGTCTAAGGGGAAGAATAAACCAAGAGTATAAAGAAACTGTTGAGCGAAGGTATTATACAATCACAGGCCAAAAGGCCGATGAAGAGACGATAGAGAATTTGATATCAAGCGGAGAGAGTGAGAGCTTTTTGCAAAAGGCGATCCAAGAAGGAGGGAGAGGTCAAATTATGGACACTATATCCGAGATGCAAGAGAGGCATGATGCCGTTAAGGAGATTGAGAAGAACTTGATCGAGCTTCATCAGATTTTCCTCGACATGGCAGCTTTGGTTGAAGCTCAAGGGCATCAATTGAACAACATAGAGAGCCATGTTGCTCATGCTAGCTCTTTTGTAAGGAGAGGGACTGATCAGCTTCAAGAGGCTAAAGTTCAACAGAGGAACTCTAGGAAGTGGACTTTTATTGCTATCATTCTTGCTATTGTTCTTATCATTGCTGTTCTCTTCCCAATCTTTGTGCAATTTGCCCCAATTGTTAAAAGAATGAGGGGGGAATTTTGA 930 45.05 MNDLFSNSFRKYADLKQQAYLDDVEAGKDSVNLDKFFEDVELVREDIKQVEKLYKNLQEANAESKVAHNGNTMKEVRSRMDSDVEKVLKRVKLIKAKLEALEMSNAAHRSLPGCGPGSSADRTRTSVVSGVGKKLKDMMDDFQGLRGRINQEYKETVERRYYTITGQKADEETIENLISSGESESFLQKAIQEGGRGQIMDTISEMQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNNIESHVAHASSFVRRGTDQLQEAKVQQRNSRKWTFIAIILAIVLIIAVLFPIFVQFAPIVKRMRGEF 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 738960 739889 + Conep01aG0013700.1 Cone1ag0131 430822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0131 309 SMART tSNARE_6 198 265 IPR000727 -
Cone1ag0131 309 CDD SNARE_syntaxin1-like 202 264 - -
Cone1ag0131 309 Gene3D - 197 297 - -
Cone1ag0131 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cone1ag0131 309 Gene3D - 33 160 - -
Cone1ag0131 309 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Cone1ag0131 309 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Cone1ag0131 309 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone1ag0131 309 Coils Coil 84 104 - -
Cone1ag0131 309 PANTHER SYNTAXIN 35 284 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone1ag0131 309 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone1ag0131 309 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
Cone1ag0131 309 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Cone1ag0131 309 FunFam Syntaxin 132 196 296 - -
Cone1ag0131 309 Pfam SNARE domain 240 291 IPR000727 -
Cone1ag0131 309 Coils Coil 40 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0552 Cone-Chr10:2571135 Cone1ag0131 Cone-Chr1:738960 1.54E-67 dispersed
Cone13ag0475 Cone-Chr13:5185404 Cone1ag0131 Cone-Chr1:738960 2.48E-107 dispersed
Cone19ag0431 Cone-Chr19:3567171 Cone1ag0131 Cone-Chr1:738960 3.76E-109 dispersed
Cone1ag0131 Cone-Chr1:738960 Cone3ag0557 Cone-Chr3:2748964 1.44E-70 dispersed
Cone1ag0131 Cone-Chr1:738960 Cone3ag1346 Cone-Chr3:32432230 1.91E-72 wgd
Cone1ag0131 Cone-Chr1:738960 Cone5ag1736 Cone-Chr5:12339572 1.53E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0131 K08486 - mdm:103446467 477.248