Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0167 ATGGAGAAAGAGTCCAATTCTTGGCTGAGGAGAACGAATTTTTCTCACACAGTTTATCATAGATGGGACTCGGTTAGATTGAACTCTAGCCCTTTAATCCTCCAACCTGACCACACAAATTTCGACTTGAAATCAAAGCCAGGAGGAACATCTTCTTCCAGTCAGAAATCGCTGTCTGGAGGGAACTCCCATTTCCATCCAAGCCCTGCCCTTGTAATGAAGCGGTCAGTCTCTCCCCTGCCTGAAATTCCGATCCCTGACACGTTCAAAGAAGCCCGGTCCAACCAAAGGCGGTTTTCAACTCCCTTGCCTAAACGTAGAGAACCTGAGAAGAAAGCGATTTCAAGAATATTATCAAGTAATGATTTTCAGGAAGTCAAGTCATCAATGAATTCAAGCCCTATGATGCAATTGACTTCTATGAAAGTCAATGAAAGGCAGAGGATTCATAAGGAATCTTCTTGGACTAAGTTGTTTGATCATGGTGGAGGTAGGGTTAGTGCGGTTGATGCCGTAGATGAATACGACGTGGATCTCTCCAAGTTGTTTCTTGGGCTTAGGTTTGCACATGGTGCCCACAGCCGGCTTTACCATGGGATATATAAAGACGAACCTGTTGCCGTTAAGTTGATTAGGGTCCCAGATGATGATGAAAATGGAGCTCTTGGTACTCGGTTAGGAAAGCAATTTAGTAGAGAAGTCACTCTTTTATCTCAGCTTCACCATCCGAATGTTATAAAGTTAGTAGCAGCATGTAGAAAACCACCGGTTTATTGTGTCATAACAGAATACCTTTCCGAAGGCTCCTTAAGGGCATATCTACGCAAACTTGAGTACAGATCCCTTACTCTCCAAAAACTTATCACAATCGCATTGGACATTGCTCGTGGGATGGAATACATTCACTCTCAAGGTGTCATTCATAGGGACCTTAAACCCGAGAACATCCTCATCGATCAAGACATCCACTTCAAAGTTGCGGATTTTGGTATAGCTTGCGAGGAGGCGTATTGTGATTTGTTGGCTGATGATCCCGGGACTTACAGGTGGATGGCCCCTGAGATGATTAAGCGTAAATCATACGGGAAAAAGGTCGATGTTTATAGTTTTGGACTTATCTTGTGGGAAATGGTTGCCGGAACAATTCCATATGAGGACATGAACCCCATTCAGGCTGCTTTCGCAGTTGTGCATAAGAATCTTAGACCCATTATTCCAGCAGACTGCCCATTGGCCATGAGAGCTTTGATCGATCAATGTTGGTCCTTGCAACCCGAAAAGAGACCGGATTTTTGGCAAGTGGTTAAGGTATTAGAACAATTTGAATCTTCACTTGCTCGTGATGGGACATTGAATTTTGTTCAAAACCAAATTTGCCAAGATCATAAGAAGGGCCTCCTCCATTGGATTCAGAAACTGGGTCCCGTTCCTTCTTCTTCCCCTAATTCGACCATGCTCATGCCTAAATTCGCATGA 1476 43.83 MEKESNSWLRRTNFSHTVYHRWDSVRLNSSPLILQPDHTNFDLKSKPGGTSSSSQKSLSGGNSHFHPSPALVMKRSVSPLPEIPIPDTFKEARSNQRRFSTPLPKRREPEKKAISRILSSNDFQEVKSSMNSSPMMQLTSMKVNERQRIHKESSWTKLFDHGGGRVSAVDAVDEYDVDLSKLFLGLRFAHGAHSRLYHGIYKDEPVAVKLIRVPDDDENGALGTRLGKQFSREVTLLSQLHHPNVIKLVAACRKPPVYCVITEYLSEGSLRAYLRKLEYRSLTLQKLITIALDIARGMEYIHSQGVIHRDLKPENILIDQDIHFKVADFGIACEEAYCDLLADDPGTYRWMAPEMIKRKSYGKKVDVYSFGLILWEMVAGTIPYEDMNPIQAAFAVVHKNLRPIIPADCPLAMRALIDQCWSLQPEKRPDFWQVVKVLEQFESSLARDGTLNFVQNQICQDHKKGLLHWIQKLGPVPSSSPNSTMLMPKFA 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 930630 934305 - Conep01aG0017500.1 Cone1ag0167 430858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0167 491 Pfam Protein tyrosine and serine/threonine kinase 189 438 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 PRINTS Tyrosine kinase catalytic domain signature 300 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 PRINTS Tyrosine kinase catalytic domain signature 365 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 PRINTS Tyrosine kinase catalytic domain signature 409 431 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 PRINTS Tyrosine kinase catalytic domain signature 346 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 PRINTS Tyrosine kinase catalytic domain signature 262 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 ProSiteProfiles Protein kinase domain profile. 182 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 PANTHER SERINE-THREONINE PROTEIN KINASE 53 440 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone1ag0167 491 Gene3D Transferase(Phosphotransferase) domain 1 267 471 - -
Cone1ag0167 491 SMART serkin_6 182 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 MobiDBLite consensus disorder prediction 38 69 - -
Cone1ag0167 491 FunFam serine/threonine-protein kinase HT1 267 460 - -
Cone1ag0167 491 CDD STKc_MAP3K-like 189 438 - -
Cone1ag0167 491 MobiDBLite consensus disorder prediction 85 111 - -
Cone1ag0167 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0167 491 MobiDBLite consensus disorder prediction 44 64 - -
Cone1ag0167 491 Gene3D Phosphorylase Kinase; domain 1 171 266 - -
Cone1ag0167 491 SUPERFAMILY Protein kinase-like (PK-like) 173 438 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0167 Cone-Chr1:930630 Cone5ag1835 Cone-Chr5:12907493 8.50E-109 dispersed
Cone1ag0167 Cone-Chr1:930630 Cone2ag0700 Cone-Chr2:32593335 1.58E-86 wgd
Cone1ag0167 Cone-Chr1:930630 Cone5ag1705 Cone-Chr5:12117338 0 wgd
Cone1ag0167 Cone-Chr1:930630 Cone6ag1010 Cone-Chr6:5633418 3.15E-230 wgd
Cone1ag0167 Cone-Chr1:930630 Cone9ag1008 Cone-Chr9:5263645 6.37E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82448 PF04641 Rtf2 1.30E-07 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0167 - - - 0.0