Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0181 | ATGGAGGTTGACGTCGGTTCAGAAGGCGAAGATCATAAGCCGAATGTTCATAATCACAGCAATAAAATCAGTAACTCGAATGAAGGTTATAGCAAGCCGAAGCGGCAGATGAAAACTCCCTTTCAGCTTGAAACTCTGGAGAAAGCCTATGCCTCGGATACGTATCCATCGGAGTCAGTTAGGGCTGAACTATCGGAGAAATTAGGGCTTTCCGACCGGCAATTGCAGATGTGGTTTTGTCACAGAAGATTGAAGGACAAGAAGGATGGTCCGGCAAAGAAACAGCGGAAGATGCCGGAAACACCGCCGCCGCCACTGGATTCTCCTATTGATGAGTTTAGAATAGGGGCTGAGCATGTTAGTGACTACGGATCGGGGTCTGGTTACGGCTCCAGTCCAGTTGGTCATATGGAGATGCATAACGCAATGCATAGAGGTGTAGGAGATGATATGTTGATGGGGAGAAGGTACTATGAGCCTTCACAATCTGTAATAGAGCTTAAAGCTATTGCTTGTGTGGAGGCACAGTTGGGAGAGCCATTGAGGGAAGATGGACCAATTCTTGGCATTGAGTTTGATCCATTACCGCCTGATGCATTTGGAGCACCTATAGCTGCAGAGCACCATAAGTGCTCTGGAATTCCTTATGAGGGAAAAGTATATGAACAATGTGAGGCAAGTTCAAAGAAGGCTGCTCCAAGAGTATTCCACGAGAATCCATTTCTTCAAGACCAATCCAGCGGTCGGCCTGATATATACGGACACCTTCCGCAATCACATTTTCCTAATTCGATTGTTGAAGTTTCCGCTGCTAGGGCAACACCTTTTTTTCATGGTAATGAACAGCTGACCAGAGACCATGGTTTCCATGGGCATGTATCACGTGTTCGTGTTTTGACGCAACAAGAAAAGCAGGGAATCAAGGTGTCTTCCCCTGCTAGAGATGATGACTATAGAAACGTTAGAATCAATGGTCAATTTACTGACATTCCACTATCTGGACCAGAACATCCATATGTATTGTCTGATGGGCATAAATTTGAAAGTAATTCTATATTGCGGATGGATAGGAAGCGTAAGAGTGGAGACCCTAGAATCACTAGAGAAGCTGGAGCCCATGAGATACGAATCCGAAAGGAGCTTGAGAAACAAGATATGCTTCGGAAAAAGAGCGAAGAACGAATGAAGAAAGAAATGGAAAGGCAAGAAAATGAAAGAAAGAAGGAAGAAGAGAGGCTACTACGTGAAAGGCAGAGAGAATTGGAAAGATTGAAACGTGAGGAAAAACGTGAAAATGAAAGAAGGGAAAAATTTCTGCAGAAAGAACATTTAAGAGCAGAGAAAATGAGGCAAAAAGAAGCTCTACGCATTGAAAGAGAGGCAGTGAGACGCAAAGCAGCAATTGAGAAGGCTACTGCACGTAGGATTGCTAGAGAATCTATGGAGCTTATTGAGGATGAGCAACTGGAACTGATGGAGCAGGCTGTTGCAAGCAAGGGATTGTCCTCAATAATCTGTCTGGACCATGACACCTTGCAGAACCTTGAATCATTCCAAGGTTTTCTTGGGTCATTCCCTCCTAAGTCTGTGCAAATGAAAAAACCATTTGGTATTGAACCATGGAGTCATTCAGAGGAGAATGTGGGAAACCTACTCATGGTTTGGAGATTTTTGATAACATTCTCTGACATTCTAGAGCTGTGGCCTTTTACCCTAGACGAGTTTGTTCAAGCTTTCCATGACCACGAGTCGAGACTGTTGGCTGAGATTCATGTTTCCCTTCTGAGGTTGATAATAAAAGATGTTGAAGATGTTGCAAGGACACCTTCAACTGGATTAGGGATGAATCAGAATGGTTCTGCCAATCCAGGTGGTGGGCATCTGCAGATTGTCGAAGGGGCATATGCATGGGGCTTTGACATTCGCAATTGGCAGCAGCACTTAAATCCTTTAACATGGCCTGAAATATTCAGACAACTAGCTCTTTCGGCTGGAATTGGACCACAGTTGAAGAAAAGGAGTGTCACATGGTCAGATATGCATTATAAAAACGAGGGTAAAGGTTGTGAAGATATAGTCTCTACTCTCCGCAATGGTTCAGCAGCTGAAAATGCATTTACAGTTATGCAAGAGAAAGGTTTATTAGCTCCACGAAAATCTAGGCATCGTTTGACCCCTGGAACTGTCAAATTTGCAGCTTTTCATGTTCTTTCCCTTGAGGGAAGCAAGGGATTAACAGTATTAGAACTTGCAGACAAGATTCAGAAATCTGGACTTAGAGACCTGACCACAAGCAAGACGCCAGAGGCCTCAATATCTGTTGCTTTGACAAGGGATACAAAGCTTTTTGAAAGGGTAGCTCCTTCAACATATCGTCTGCGATCGCCTTATAGAAAGGATCCTAATGATGCTGAAGAGATTCTTTCAGAAGCCAGAAAGAAAATTCAGATATTTCAAAATGGGGTTTTAGCTGAAGAATATGTCAATGATGTGGAAAGAGATGAAGAATCTGAATGTGAGGATGTTGATGATGATCCTGAAGTTGATGATTTAGCTATCCCTTCTTTAGCAGACAAAGAGCCTAATAATACTAATGAAGCAGATACTCACATAGAAACTGGGATAGAGAACTTTTCATGCAATGTTTCACCAATTCCAGAAAATCAATTTGGCAAGGACTTGTCATCGTTTCCCTTGAGTGGTTCCAAGGATCCAAACTATCCGAGCATTGCCACAGAGGAATACACTCCTGTTGATGATATAGCTGTTAGTAAACCTGATCAAGAAAATATGGAGATTGATGATAGCAAGGCAGGTGAATCATGGGTTCAAGGTCTTGCAGAAGGGGATTATTATGATCTCAGTGTAGAGGAGCGCTTAAATGCTATAGTTGCATTAACAGGCATTGCAAACGAAGGAAACTCCATTCGTATTGTTCTTGAGGAACGATTGGAAGCAGCAAACACTCTAAAGAAGCAGATGTGGGCAGAGGCACATCTAGATAAAGGTCGCTTGAGAGAAGAGACTATAACTAAATCAGATTTCCCATCCTTCACAGGCAGTAAACCTGAAACACAACTTAATACCCCCTCTTTGGAGGGTGGCCAAAGCCCAATACCTGATAGTGAAAATATAAAGAATGAGGTGTCCCCAAGCCCTGCAGAAAACCAAAGGTTACTCAATGATCCACAAAGTGTTCATAATCACCTCAGCAGTGTGCCTGGTGAAAGGGCCTCCTCTGTGTTGCAAGATTTTTCCACCGGCCCTGATAGCTTCCTGGTCCAGCAACTTGGAAATGCTTCAAAAAGGTCAAGGTCGCAGTTAAAATCTTATATCTCCCATAGGGCTGAAGAGATGTACATATACAGGTCCTTGCCTCTTGGTCGAGATCGCAGGCGTAACTGGTACTGGCAGTTTGTTGCCTCTGCTTCAAGCAATGATCCTGGCTCTGGAAGGATCTTTATTGAATTGCATGATGGAAATTGGAAGCTTATTGATACGGAAGAGGCATTTGATGCTCTTTTGATGTCCTTGGACCCACGAGGGATAAGAGAATCCCATCTACGGTTAATGTTGCAAAAGATCGAGTCATGCTTCAAGGAAAATTTTAAAAAGACTGTGCAATGTGGGATTGGTGTTAAAAGTGAAGCTGATGAAAGGGGTTCAAGCCCTGTCTGCCCTGCTACCTCTGACAGTCCTCGCAGCACAGTTTGTGGCTCAAATAATGATACAATGGTCACCTCATCTTCATTCAGGGTTGAACTTGGGAGAAATGAATCGGAGAAAAAGGCTGCGTTCAAAAGGTATCGAGAATTTCAGAGGTGGAATTGGAAAGAATGCTTCAATTCATCAACATTAGGTGCCATGAATTATGGGAAAAAGAGGTGTAAACAGCTCTTGGACATTTGTGACTCCTGTCTCAGTTTGTACAGCTCTGAACACTCACACTGCCTCTCTTGCCGTCAAACTGTTGGAATCGTTAGTAATGACTTTGATTCTTTGGAACTTGGGATTCCGTTTCAAGAAGAAAGTAAATCAAACAATTGTGATGTCAATAGTCTAAATTCTTCTCTTCCCCTTGGTAGGAGATTGCTCAAGGCCCTGTTATCTTTCATTGAGGCATCTGTACCATCAGAAGCTCTTCAATCATTATGGACAGAAGAATGTAGAAAGACTTGGGGTGTGAAGTTAAACATGTCATCGTACACTGACGAACTTCTACAGCTATTGACCCTATTTGAGGGTGTGATCAAGCGAGATTTTTTGTCATCAAAGTATGCTGCGACAGAGGAGATTTTAGGATCCCGAGTACATGATCCTACAGATGCCGATTCTATTCTTGTACTACCATGGATACCTCAAACTAGTGCAGCTGTGGCTTTAAGGCTCTTTGAGCTAGATGCATCAATTATATATGTGCCATGTGAGAAACCCGAGTGTGGTCCAGACAATGAAAATGGAGGAGAATATGAGTTTCCTGCAAGAAATAATGCTCTTCTGAAGAATGAAAGAGGAGAGTATGAGCCAACTGAATTAGGATTCGAAGAGCCATTGAAGGAACAAAGCTATGTTGACTTGAAAAATGCCCGAAACAGCTACAAATGTGGTGGGAGAGGGAATCGTGACCCGGCCCGTAGCAAAAAACTGCAGAAAAGAAACAACGGGTCCAAGTCCATTTCCGTTTCTGCCCAACAAAATCCTAAGGGCAGTGAAAAACTGAGTCAAGGATTTAGTAGTAGACCTCTCGCCCAAGGAACCACACAAGTACAAGGCCCTAGGGGTCGTCGAACTATTAGGAGAAGAAGAGAAGAGATGAGAGCTCCTCAAGAAAACCTGTTTGGCCAGACAACCCTTACACCTTATCAAGATAGAGGTGAATCCCTTAAAGAATCTCTTAGCCCAGAATGGGACGATGAAAATATCAATAATGCAGCTGTTCATATGAAGAATGATGATGATGTGAACAATGTGGAAGCAATGGATTCTGATGATGATGATGTGGGGCCGGCAGTAGGATATGATCAGGAGAACTGGGAACTAAGTTATAACCGTGCATCTGATGGCTGGAACGAGGATGTAATAGGAGCAAGCGATGAGAATGTGGATGCATCTGAAGATGATAATGACATCGCAGAAGAGGAAGCAGTGGTAGGAGATGAAGATGATTCAGAAGAAGAGGATGTAGATATGAGTGAAGAGGAGGAAGAATCTGATGGAGTAATACCAAATAGGCTGAGAAATGATGAAGATGACATAGAATCAGCCGAGGATTATAGTGATGATGATTAA | 5289 | 42.99 | MEVDVGSEGEDHKPNVHNHSNKISNSNEGYSKPKRQMKTPFQLETLEKAYASDTYPSESVRAELSEKLGLSDRQLQMWFCHRRLKDKKDGPAKKQRKMPETPPPPLDSPIDEFRIGAEHVSDYGSGSGYGSSPVGHMEMHNAMHRGVGDDMLMGRRYYEPSQSVIELKAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPIAAEHHKCSGIPYEGKVYEQCEASSKKAAPRVFHENPFLQDQSSGRPDIYGHLPQSHFPNSIVEVSAARATPFFHGNEQLTRDHGFHGHVSRVRVLTQQEKQGIKVSSPARDDDYRNVRINGQFTDIPLSGPEHPYVLSDGHKFESNSILRMDRKRKSGDPRITREAGAHEIRIRKELEKQDMLRKKSEERMKKEMERQENERKKEEERLLRERQRELERLKREEKRENERREKFLQKEHLRAEKMRQKEALRIEREAVRRKAAIEKATARRIARESMELIEDEQLELMEQAVASKGLSSIICLDHDTLQNLESFQGFLGSFPPKSVQMKKPFGIEPWSHSEENVGNLLMVWRFLITFSDILELWPFTLDEFVQAFHDHESRLLAEIHVSLLRLIIKDVEDVARTPSTGLGMNQNGSANPGGGHLQIVEGAYAWGFDIRNWQQHLNPLTWPEIFRQLALSAGIGPQLKKRSVTWSDMHYKNEGKGCEDIVSTLRNGSAAENAFTVMQEKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERVAPSTYRLRSPYRKDPNDAEEILSEARKKIQIFQNGVLAEEYVNDVERDEESECEDVDDDPEVDDLAIPSLADKEPNNTNEADTHIETGIENFSCNVSPIPENQFGKDLSSFPLSGSKDPNYPSIATEEYTPVDDIAVSKPDQENMEIDDSKAGESWVQGLAEGDYYDLSVEERLNAIVALTGIANEGNSIRIVLEERLEAANTLKKQMWAEAHLDKGRLREETITKSDFPSFTGSKPETQLNTPSLEGGQSPIPDSENIKNEVSPSPAENQRLLNDPQSVHNHLSSVPGERASSVLQDFSTGPDSFLVQQLGNASKRSRSQLKSYISHRAEEMYIYRSLPLGRDRRRNWYWQFVASASSNDPGSGRIFIELHDGNWKLIDTEEAFDALLMSLDPRGIRESHLRLMLQKIESCFKENFKKTVQCGIGVKSEADERGSSPVCPATSDSPRSTVCGSNNDTMVTSSSFRVELGRNESEKKAAFKRYREFQRWNWKECFNSSTLGAMNYGKKRCKQLLDICDSCLSLYSSEHSHCLSCRQTVGIVSNDFDSLELGIPFQEESKSNNCDVNSLNSSLPLGRRLLKALLSFIEASVPSEALQSLWTEECRKTWGVKLNMSSYTDELLQLLTLFEGVIKRDFLSSKYAATEEILGSRVHDPTDADSILVLPWIPQTSAAVALRLFELDASIIYVPCEKPECGPDNENGGEYEFPARNNALLKNERGEYEPTELGFEEPLKEQSYVDLKNARNSYKCGGRGNRDPARSKKLQKRNNGSKSISVSAQQNPKGSEKLSQGFSSRPLAQGTTQVQGPRGRRTIRRRREEMRAPQENLFGQTTLTPYQDRGESLKESLSPEWDDENINNAAVHMKNDDDVNNVEAMDSDDDDVGPAVGYDQENWELSYNRASDGWNEDVIGASDENVDASEDDNDIAEEEAVVGDEDDSEEEDVDMSEEEEESDGVIPNRLRNDEDDIESAEDYSDDD | 1762 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1028847 | 1038011 | - | Conep01aG0018900.1 | Cone1ag0181 | 430872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0181 | 1762 | Pfam | DDT domain | 546 | 601 | IPR018501 | - | |
Cone1ag0181 | 1762 | Gene3D | - | 17 | 91 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 19 | 33 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1657 | 1762 | - | - | |
Cone1ag0181 | 1762 | SUPERFAMILY | Homeodomain-like | 20 | 88 | IPR009057 | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1007 | 1059 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1012 | 1059 | - | - | |
Cone1ag0181 | 1762 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 727 | 795 | IPR007759 | GO:0006355(InterPro) | |
Cone1ag0181 | 1762 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 937 | 981 | IPR028942 | - | |
Cone1ag0181 | 1762 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 7 | 1736 | IPR044977 | GO:0006357(InterPro) | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1698 | 1736 | - | - | |
Cone1ag0181 | 1762 | ProSiteProfiles | DDT domain profile. | 545 | 604 | IPR018501 | - | |
Cone1ag0181 | 1762 | Coils | Coil | 387 | 441 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 84 | 108 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1530 | 1617 | - | - | |
Cone1ag0181 | 1762 | SMART | testlast3 | 545 | 604 | IPR018501 | - | |
Cone1ag0181 | 1762 | SMART | HOX_1 | 31 | 93 | IPR001356 | GO:0003677(InterPro) | |
Cone1ag0181 | 1762 | Coils | Coil | 445 | 465 | - | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1553 | 1593 | - | - | |
Cone1ag0181 | 1762 | ProSiteProfiles | HARE-type HTH domain profile. | 727 | 796 | IPR007759 | GO:0006355(InterPro) | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1737 | 1751 | - | - | |
Cone1ag0181 | 1762 | CDD | homeodomain | 34 | 88 | IPR001356 | GO:0003677(InterPro) | |
Cone1ag0181 | 1762 | Pfam | Homeodomain | 32 | 88 | IPR001356 | GO:0003677(InterPro) | |
Cone1ag0181 | 1762 | ProSiteProfiles | 'Homeobox' domain profile. | 29 | 89 | IPR001356 | GO:0003677(InterPro) | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cone1ag0181 | 1762 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1122 | 1195 | IPR028941 | - | |
Cone1ag0181 | 1762 | MobiDBLite | consensus disorder prediction | 387 | 411 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0181 | Cone-Chr1:1028847 | Cone6ag1221 | Cone-Chr6:9573943 | 1.87E-06 | dispersed | |
Cone5ag1460 | Cone-Chr5:9588173 | Cone1ag0181 | Cone-Chr1:1028847 | 1.54E-15 | transposed | |
Cone1ag0181 | Cone-Chr1:1028847 | Cone10ag1254 | Cone-Chr10:9597807 | 0 | wgd | |
Cone1ag0181 | Cone-Chr1:1028847 | Cone5ag1688 | Cone-Chr5:12010010 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45406 | PF00804 | Syntaxin | 8.80E-71 | CL0445 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0181 | - | - | - | 0.0 |