Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0181 ATGGAGGTTGACGTCGGTTCAGAAGGCGAAGATCATAAGCCGAATGTTCATAATCACAGCAATAAAATCAGTAACTCGAATGAAGGTTATAGCAAGCCGAAGCGGCAGATGAAAACTCCCTTTCAGCTTGAAACTCTGGAGAAAGCCTATGCCTCGGATACGTATCCATCGGAGTCAGTTAGGGCTGAACTATCGGAGAAATTAGGGCTTTCCGACCGGCAATTGCAGATGTGGTTTTGTCACAGAAGATTGAAGGACAAGAAGGATGGTCCGGCAAAGAAACAGCGGAAGATGCCGGAAACACCGCCGCCGCCACTGGATTCTCCTATTGATGAGTTTAGAATAGGGGCTGAGCATGTTAGTGACTACGGATCGGGGTCTGGTTACGGCTCCAGTCCAGTTGGTCATATGGAGATGCATAACGCAATGCATAGAGGTGTAGGAGATGATATGTTGATGGGGAGAAGGTACTATGAGCCTTCACAATCTGTAATAGAGCTTAAAGCTATTGCTTGTGTGGAGGCACAGTTGGGAGAGCCATTGAGGGAAGATGGACCAATTCTTGGCATTGAGTTTGATCCATTACCGCCTGATGCATTTGGAGCACCTATAGCTGCAGAGCACCATAAGTGCTCTGGAATTCCTTATGAGGGAAAAGTATATGAACAATGTGAGGCAAGTTCAAAGAAGGCTGCTCCAAGAGTATTCCACGAGAATCCATTTCTTCAAGACCAATCCAGCGGTCGGCCTGATATATACGGACACCTTCCGCAATCACATTTTCCTAATTCGATTGTTGAAGTTTCCGCTGCTAGGGCAACACCTTTTTTTCATGGTAATGAACAGCTGACCAGAGACCATGGTTTCCATGGGCATGTATCACGTGTTCGTGTTTTGACGCAACAAGAAAAGCAGGGAATCAAGGTGTCTTCCCCTGCTAGAGATGATGACTATAGAAACGTTAGAATCAATGGTCAATTTACTGACATTCCACTATCTGGACCAGAACATCCATATGTATTGTCTGATGGGCATAAATTTGAAAGTAATTCTATATTGCGGATGGATAGGAAGCGTAAGAGTGGAGACCCTAGAATCACTAGAGAAGCTGGAGCCCATGAGATACGAATCCGAAAGGAGCTTGAGAAACAAGATATGCTTCGGAAAAAGAGCGAAGAACGAATGAAGAAAGAAATGGAAAGGCAAGAAAATGAAAGAAAGAAGGAAGAAGAGAGGCTACTACGTGAAAGGCAGAGAGAATTGGAAAGATTGAAACGTGAGGAAAAACGTGAAAATGAAAGAAGGGAAAAATTTCTGCAGAAAGAACATTTAAGAGCAGAGAAAATGAGGCAAAAAGAAGCTCTACGCATTGAAAGAGAGGCAGTGAGACGCAAAGCAGCAATTGAGAAGGCTACTGCACGTAGGATTGCTAGAGAATCTATGGAGCTTATTGAGGATGAGCAACTGGAACTGATGGAGCAGGCTGTTGCAAGCAAGGGATTGTCCTCAATAATCTGTCTGGACCATGACACCTTGCAGAACCTTGAATCATTCCAAGGTTTTCTTGGGTCATTCCCTCCTAAGTCTGTGCAAATGAAAAAACCATTTGGTATTGAACCATGGAGTCATTCAGAGGAGAATGTGGGAAACCTACTCATGGTTTGGAGATTTTTGATAACATTCTCTGACATTCTAGAGCTGTGGCCTTTTACCCTAGACGAGTTTGTTCAAGCTTTCCATGACCACGAGTCGAGACTGTTGGCTGAGATTCATGTTTCCCTTCTGAGGTTGATAATAAAAGATGTTGAAGATGTTGCAAGGACACCTTCAACTGGATTAGGGATGAATCAGAATGGTTCTGCCAATCCAGGTGGTGGGCATCTGCAGATTGTCGAAGGGGCATATGCATGGGGCTTTGACATTCGCAATTGGCAGCAGCACTTAAATCCTTTAACATGGCCTGAAATATTCAGACAACTAGCTCTTTCGGCTGGAATTGGACCACAGTTGAAGAAAAGGAGTGTCACATGGTCAGATATGCATTATAAAAACGAGGGTAAAGGTTGTGAAGATATAGTCTCTACTCTCCGCAATGGTTCAGCAGCTGAAAATGCATTTACAGTTATGCAAGAGAAAGGTTTATTAGCTCCACGAAAATCTAGGCATCGTTTGACCCCTGGAACTGTCAAATTTGCAGCTTTTCATGTTCTTTCCCTTGAGGGAAGCAAGGGATTAACAGTATTAGAACTTGCAGACAAGATTCAGAAATCTGGACTTAGAGACCTGACCACAAGCAAGACGCCAGAGGCCTCAATATCTGTTGCTTTGACAAGGGATACAAAGCTTTTTGAAAGGGTAGCTCCTTCAACATATCGTCTGCGATCGCCTTATAGAAAGGATCCTAATGATGCTGAAGAGATTCTTTCAGAAGCCAGAAAGAAAATTCAGATATTTCAAAATGGGGTTTTAGCTGAAGAATATGTCAATGATGTGGAAAGAGATGAAGAATCTGAATGTGAGGATGTTGATGATGATCCTGAAGTTGATGATTTAGCTATCCCTTCTTTAGCAGACAAAGAGCCTAATAATACTAATGAAGCAGATACTCACATAGAAACTGGGATAGAGAACTTTTCATGCAATGTTTCACCAATTCCAGAAAATCAATTTGGCAAGGACTTGTCATCGTTTCCCTTGAGTGGTTCCAAGGATCCAAACTATCCGAGCATTGCCACAGAGGAATACACTCCTGTTGATGATATAGCTGTTAGTAAACCTGATCAAGAAAATATGGAGATTGATGATAGCAAGGCAGGTGAATCATGGGTTCAAGGTCTTGCAGAAGGGGATTATTATGATCTCAGTGTAGAGGAGCGCTTAAATGCTATAGTTGCATTAACAGGCATTGCAAACGAAGGAAACTCCATTCGTATTGTTCTTGAGGAACGATTGGAAGCAGCAAACACTCTAAAGAAGCAGATGTGGGCAGAGGCACATCTAGATAAAGGTCGCTTGAGAGAAGAGACTATAACTAAATCAGATTTCCCATCCTTCACAGGCAGTAAACCTGAAACACAACTTAATACCCCCTCTTTGGAGGGTGGCCAAAGCCCAATACCTGATAGTGAAAATATAAAGAATGAGGTGTCCCCAAGCCCTGCAGAAAACCAAAGGTTACTCAATGATCCACAAAGTGTTCATAATCACCTCAGCAGTGTGCCTGGTGAAAGGGCCTCCTCTGTGTTGCAAGATTTTTCCACCGGCCCTGATAGCTTCCTGGTCCAGCAACTTGGAAATGCTTCAAAAAGGTCAAGGTCGCAGTTAAAATCTTATATCTCCCATAGGGCTGAAGAGATGTACATATACAGGTCCTTGCCTCTTGGTCGAGATCGCAGGCGTAACTGGTACTGGCAGTTTGTTGCCTCTGCTTCAAGCAATGATCCTGGCTCTGGAAGGATCTTTATTGAATTGCATGATGGAAATTGGAAGCTTATTGATACGGAAGAGGCATTTGATGCTCTTTTGATGTCCTTGGACCCACGAGGGATAAGAGAATCCCATCTACGGTTAATGTTGCAAAAGATCGAGTCATGCTTCAAGGAAAATTTTAAAAAGACTGTGCAATGTGGGATTGGTGTTAAAAGTGAAGCTGATGAAAGGGGTTCAAGCCCTGTCTGCCCTGCTACCTCTGACAGTCCTCGCAGCACAGTTTGTGGCTCAAATAATGATACAATGGTCACCTCATCTTCATTCAGGGTTGAACTTGGGAGAAATGAATCGGAGAAAAAGGCTGCGTTCAAAAGGTATCGAGAATTTCAGAGGTGGAATTGGAAAGAATGCTTCAATTCATCAACATTAGGTGCCATGAATTATGGGAAAAAGAGGTGTAAACAGCTCTTGGACATTTGTGACTCCTGTCTCAGTTTGTACAGCTCTGAACACTCACACTGCCTCTCTTGCCGTCAAACTGTTGGAATCGTTAGTAATGACTTTGATTCTTTGGAACTTGGGATTCCGTTTCAAGAAGAAAGTAAATCAAACAATTGTGATGTCAATAGTCTAAATTCTTCTCTTCCCCTTGGTAGGAGATTGCTCAAGGCCCTGTTATCTTTCATTGAGGCATCTGTACCATCAGAAGCTCTTCAATCATTATGGACAGAAGAATGTAGAAAGACTTGGGGTGTGAAGTTAAACATGTCATCGTACACTGACGAACTTCTACAGCTATTGACCCTATTTGAGGGTGTGATCAAGCGAGATTTTTTGTCATCAAAGTATGCTGCGACAGAGGAGATTTTAGGATCCCGAGTACATGATCCTACAGATGCCGATTCTATTCTTGTACTACCATGGATACCTCAAACTAGTGCAGCTGTGGCTTTAAGGCTCTTTGAGCTAGATGCATCAATTATATATGTGCCATGTGAGAAACCCGAGTGTGGTCCAGACAATGAAAATGGAGGAGAATATGAGTTTCCTGCAAGAAATAATGCTCTTCTGAAGAATGAAAGAGGAGAGTATGAGCCAACTGAATTAGGATTCGAAGAGCCATTGAAGGAACAAAGCTATGTTGACTTGAAAAATGCCCGAAACAGCTACAAATGTGGTGGGAGAGGGAATCGTGACCCGGCCCGTAGCAAAAAACTGCAGAAAAGAAACAACGGGTCCAAGTCCATTTCCGTTTCTGCCCAACAAAATCCTAAGGGCAGTGAAAAACTGAGTCAAGGATTTAGTAGTAGACCTCTCGCCCAAGGAACCACACAAGTACAAGGCCCTAGGGGTCGTCGAACTATTAGGAGAAGAAGAGAAGAGATGAGAGCTCCTCAAGAAAACCTGTTTGGCCAGACAACCCTTACACCTTATCAAGATAGAGGTGAATCCCTTAAAGAATCTCTTAGCCCAGAATGGGACGATGAAAATATCAATAATGCAGCTGTTCATATGAAGAATGATGATGATGTGAACAATGTGGAAGCAATGGATTCTGATGATGATGATGTGGGGCCGGCAGTAGGATATGATCAGGAGAACTGGGAACTAAGTTATAACCGTGCATCTGATGGCTGGAACGAGGATGTAATAGGAGCAAGCGATGAGAATGTGGATGCATCTGAAGATGATAATGACATCGCAGAAGAGGAAGCAGTGGTAGGAGATGAAGATGATTCAGAAGAAGAGGATGTAGATATGAGTGAAGAGGAGGAAGAATCTGATGGAGTAATACCAAATAGGCTGAGAAATGATGAAGATGACATAGAATCAGCCGAGGATTATAGTGATGATGATTAA 5289 42.99 MEVDVGSEGEDHKPNVHNHSNKISNSNEGYSKPKRQMKTPFQLETLEKAYASDTYPSESVRAELSEKLGLSDRQLQMWFCHRRLKDKKDGPAKKQRKMPETPPPPLDSPIDEFRIGAEHVSDYGSGSGYGSSPVGHMEMHNAMHRGVGDDMLMGRRYYEPSQSVIELKAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPIAAEHHKCSGIPYEGKVYEQCEASSKKAAPRVFHENPFLQDQSSGRPDIYGHLPQSHFPNSIVEVSAARATPFFHGNEQLTRDHGFHGHVSRVRVLTQQEKQGIKVSSPARDDDYRNVRINGQFTDIPLSGPEHPYVLSDGHKFESNSILRMDRKRKSGDPRITREAGAHEIRIRKELEKQDMLRKKSEERMKKEMERQENERKKEEERLLRERQRELERLKREEKRENERREKFLQKEHLRAEKMRQKEALRIEREAVRRKAAIEKATARRIARESMELIEDEQLELMEQAVASKGLSSIICLDHDTLQNLESFQGFLGSFPPKSVQMKKPFGIEPWSHSEENVGNLLMVWRFLITFSDILELWPFTLDEFVQAFHDHESRLLAEIHVSLLRLIIKDVEDVARTPSTGLGMNQNGSANPGGGHLQIVEGAYAWGFDIRNWQQHLNPLTWPEIFRQLALSAGIGPQLKKRSVTWSDMHYKNEGKGCEDIVSTLRNGSAAENAFTVMQEKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDTKLFERVAPSTYRLRSPYRKDPNDAEEILSEARKKIQIFQNGVLAEEYVNDVERDEESECEDVDDDPEVDDLAIPSLADKEPNNTNEADTHIETGIENFSCNVSPIPENQFGKDLSSFPLSGSKDPNYPSIATEEYTPVDDIAVSKPDQENMEIDDSKAGESWVQGLAEGDYYDLSVEERLNAIVALTGIANEGNSIRIVLEERLEAANTLKKQMWAEAHLDKGRLREETITKSDFPSFTGSKPETQLNTPSLEGGQSPIPDSENIKNEVSPSPAENQRLLNDPQSVHNHLSSVPGERASSVLQDFSTGPDSFLVQQLGNASKRSRSQLKSYISHRAEEMYIYRSLPLGRDRRRNWYWQFVASASSNDPGSGRIFIELHDGNWKLIDTEEAFDALLMSLDPRGIRESHLRLMLQKIESCFKENFKKTVQCGIGVKSEADERGSSPVCPATSDSPRSTVCGSNNDTMVTSSSFRVELGRNESEKKAAFKRYREFQRWNWKECFNSSTLGAMNYGKKRCKQLLDICDSCLSLYSSEHSHCLSCRQTVGIVSNDFDSLELGIPFQEESKSNNCDVNSLNSSLPLGRRLLKALLSFIEASVPSEALQSLWTEECRKTWGVKLNMSSYTDELLQLLTLFEGVIKRDFLSSKYAATEEILGSRVHDPTDADSILVLPWIPQTSAAVALRLFELDASIIYVPCEKPECGPDNENGGEYEFPARNNALLKNERGEYEPTELGFEEPLKEQSYVDLKNARNSYKCGGRGNRDPARSKKLQKRNNGSKSISVSAQQNPKGSEKLSQGFSSRPLAQGTTQVQGPRGRRTIRRRREEMRAPQENLFGQTTLTPYQDRGESLKESLSPEWDDENINNAAVHMKNDDDVNNVEAMDSDDDDVGPAVGYDQENWELSYNRASDGWNEDVIGASDENVDASEDDNDIAEEEAVVGDEDDSEEEDVDMSEEEEESDGVIPNRLRNDEDDIESAEDYSDDD 1762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1028847 1038011 - Conep01aG0018900.1 Cone1ag0181 430872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0181 1762 Pfam DDT domain 546 601 IPR018501 -
Cone1ag0181 1762 Gene3D - 17 91 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 19 33 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1657 1762 - -
Cone1ag0181 1762 SUPERFAMILY Homeodomain-like 20 88 IPR009057 -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1007 1059 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1012 1059 - -
Cone1ag0181 1762 Pfam HB1, ASXL, restriction endonuclease HTH domain 727 795 IPR007759 GO:0006355(InterPro)
Cone1ag0181 1762 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 937 981 IPR028942 -
Cone1ag0181 1762 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1736 IPR044977 GO:0006357(InterPro)
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1 45 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1698 1736 - -
Cone1ag0181 1762 ProSiteProfiles DDT domain profile. 545 604 IPR018501 -
Cone1ag0181 1762 Coils Coil 387 441 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 84 108 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1530 1617 - -
Cone1ag0181 1762 SMART testlast3 545 604 IPR018501 -
Cone1ag0181 1762 SMART HOX_1 31 93 IPR001356 GO:0003677(InterPro)
Cone1ag0181 1762 Coils Coil 445 465 - -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1553 1593 - -
Cone1ag0181 1762 ProSiteProfiles HARE-type HTH domain profile. 727 796 IPR007759 GO:0006355(InterPro)
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1737 1751 - -
Cone1ag0181 1762 CDD homeodomain 34 88 IPR001356 GO:0003677(InterPro)
Cone1ag0181 1762 Pfam Homeodomain 32 88 IPR001356 GO:0003677(InterPro)
Cone1ag0181 1762 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677(InterPro)
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 1 18 - -
Cone1ag0181 1762 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1122 1195 IPR028941 -
Cone1ag0181 1762 MobiDBLite consensus disorder prediction 387 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0181 Cone-Chr1:1028847 Cone6ag1221 Cone-Chr6:9573943 1.87E-06 dispersed
Cone5ag1460 Cone-Chr5:9588173 Cone1ag0181 Cone-Chr1:1028847 1.54E-15 transposed
Cone1ag0181 Cone-Chr1:1028847 Cone10ag1254 Cone-Chr10:9597807 0 wgd
Cone1ag0181 Cone-Chr1:1028847 Cone5ag1688 Cone-Chr5:12010010 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45406 PF00804 Syntaxin 8.80E-71 CL0445 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0181 - - - 0.0