Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0187 ATGCGGAAGGGTTCGAAGAGCAATTGCAAGTCAGTGTCCCATAAGCTCTTTAAGGACAAGGCAAAGAACCGGGTTGATGATCTGCAGAGTATGTTCACGGATCTGCAGTATGCAAGGAAAGAAAGCCGGTCAGTTGATGTGTCGGTCCTTGAGGAACAAGTCCACCAGATGCTTCGAGAGTGGAAATCTGAGCTCAATGAACCTTCTCCGGCATCTTCCTTGCAACAAGTTAGCATTGGTGGGAGTCTGGGGTCTTTTTCGTCTGACATTTGCCGGCTTCTGCAACTTTATGAGGAGGAAGATGATGCAACTAGTCCGTTAGCTGCACCAAAGCCTGAGCCTAATGATCAGGTGTTGCCAGTTGGAGATACTATGGAATTTCGTGAGTTTCAGGGGTTTGATGTGAATCATGGGCAGCAAGAACGAGGTTTTCCACTAGTCGATCCATGCAAAAATTCTCCTTCAGTAGCTCATGATGTTACTACTAACAACTTGGAAAGGCATACTCATTTGGAGTATCAGCAGTATGATTTTCATCAACAATTTGATCACAACCTCTATCCTGGATTTAATGCCATGTGTGGGGAAGATACCGTGCCTCAGATTTCTAGCTATTTGCCAAGCATATGTCCACCACCTTCTGCTTTCTTGGGCCCAAAGTGTGCACTTTGGGATTGTCCAAGGCCAGCTCAAGGTCTGGATTGGTGTCAAGATTATTGCAGCAGCTTTCATGCTGCTCTAGCATTGAATGAAGGCCCACCTGGAATGAGCCCTGTTCTACGACCTGGAGGCATTGGCCTGAAGGATGGTTTACTTTTTTCCGCTCTTGGTGCAAAGGTACAAGGAAAAGATGTTGGTATCCCAGAATGTGAGGGAGCGGCTACTGCAAAGTCTCCATGGAATGCACCTGAACTCTTTGATCTTTCGGTTCTGGAGGGTGAGTCGATAAGGGAGTGGCTATTTTTTGATAAGCCCAGAAGAGCATTTGAGAGTGGTAATAGGAAGCAGAGGTCCTTACCAGATTACAATGGACGTGGTTGGCATGAATCAAGGAAGCAAGTGATGAATGAATTTGGAGGGTTAAAGAGATCCTACTACATGGACCCACAACCATTGAACCATTTTGAATGGCATCTTTATGAATATGAGATAAACAAGTACGACTCGTGCGCCTTGTACAGGTTGGAGCTTAAACTTGTAGATGGGAAGAAAAATTCCAAGGGGAAAATCACAAATGATTCACTTGCTGATTTGCAGAAGCAAATGGGGAGGCTCTCTGCGGAATTTCCGTTGGATAATAATAAGCGGAATATTAAGGGGAGAGTGAAAGTCAACACAAAAGTCGGGAATGGAAATGTTTATTCCAATCTCAATCGTGGCCCACCAACAAATGGAACATTTGATTATGCGCTAAGTGCTCAGTATGATTATCTTGTTGATAATATAGGCGAGTATTACTTGACATAA 1467 44.44 MRKGSKSNCKSVSHKLFKDKAKNRVDDLQSMFTDLQYARKESRSVDVSVLEEQVHQMLREWKSELNEPSPASSLQQVSIGGSLGSFSSDICRLLQLYEEEDDATSPLAAPKPEPNDQVLPVGDTMEFREFQGFDVNHGQQERGFPLVDPCKNSPSVAHDVTTNNLERHTHLEYQQYDFHQQFDHNLYPGFNAMCGEDTVPQISSYLPSICPPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMSPVLRPGGIGLKDGLLFSALGAKVQGKDVGIPECEGAATAKSPWNAPELFDLSVLEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDSCALYRLELKLVDGKKNSKGKITNDSLADLQKQMGRLSAEFPLDNNKRNIKGRVKVNTKVGNGNVYSNLNRGPPTNGTFDYALSAQYDYLVDNIGEYYLT 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1066913 1070542 + Conep01aG0019500.1 Cone1ag0187 430878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0187 488 PANTHER TRANSCRIPTION FACTOR VOZ1 1 486 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(PANTHER)|GO:0048578(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0187 Cone-Chr1:1066913 Cone10ag1260 Cone-Chr10:9687871 3.12E-172 wgd
Cone1ag0187 Cone-Chr1:1066913 Cone5ag1682 Cone-Chr5:11969071 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45408 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0187 - - - 0.0