Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0212 | ATGGCGGATGAATTCAAAAAGAACAGCAGCAGCAGCAAGAAGGATTTCCAGTCTCTTCTCTTAGGTCGTTACGAGGTCGGGAAGCTTCTCGGCCATGGAACCTTCGCCAAAGTCTACCACGCTCGGAACATAAAATCGAACGAAAGCGTAGCTATCAAGATCATCGACAAGGAGAAGATCTTGAAAGGAGGTCTAATCGCTCACATCAAGCGCGAGATCTCGATTCTCCGCCGTGTTCGTCATCCGAACATAGTCCAACTCTTCGAGGTCATGGCTACGAAGGCCAAGATTTACTTCGTCATGGAGTATGTTCGCGGCGGCGAGCTTTTCAAGAAGGTCGCGAAAGGTCGGTTGAAGGAAGAACTATCTCGGAAATATTTTCAGCAATTGATCTCCGCCGTCGGATTCTGCCACGCTCGCGGCGTTTACCACCGCGACCTGAAGCCAGAAAACCTCTTGCTCGACCTAAATGGTGATCTGAAAGTCTCCGATTTCGGACTCAGCGCCGTATCAGATCAGATTCGTCAGGACGGCTTGTTCCATACATTTTGCGGCACCCCGGCTTACGTTGCGCCTGAAGTTCTAGCTCGACGCGGCTATGAAGCTGCTAAGGTAGATATCTGGGCCTGTGGAATCGTTCTATTTGTTCTTATGGCTGGCTATTTACCATTCCAGGACCAGAATATCATGGCAATGTATAAGAAAATCTACAAAGGCGACTTCAGGTGCCCTAAGTGGTTCTCACCAGACCTGAGTCGGCTCCTAATTCGCCTTCTCGATACAAATCCTGAAACCAGAATCACAATCCCTGAAATTATGGAAAACAGATGGTTCAAAAAAGGGTTTAAGCATATAAAATTCTATATAGAGGATGATAAGCTCTGTAATGTTGTAGATGATGATGTCGATTCTTTATCCGAAAAATCTTTATCCGAATCGGATTCAGAAACCGAGCCAAGAAGGAGGATTAATACTTCCTTACCTAGACCGGCTAGTTTAAACGCATTTGATATAATATCCTTTTCGCCCGGTTTTGATCTTTCCGGTTTGTTTGAAGATGGAGGAGAGGAAGCTAGGTTTGTTTCCGGTGCTCCCGTTTCTGAAATTATAGCGAAACTAGAGGAGATTGCAAGAGTGGTGAGCTTTACAGTGAGGAAGAAGGATTGTAGAGTGAGCTTGGAAGGGTCAAGAGAAGGTGTAAGGGGGCCATTATCAATTGCAGCTGAGATTTTCGAGTTGACATCTGAATTGGTAGTTGTGGAGGTGAAGAAGAAAGGAGGGGATAAAGCAGAGTATGAACAATTCTGTAATACAGAATTGAAGCGTGGATTGCAGAATTTGATGCTTGAAAAGTCTTCATCTTCGTCAAGCTTGATTTATGATACGGAATAG | 1392 | 45.19 | MADEFKKNSSSSKKDFQSLLLGRYEVGKLLGHGTFAKVYHARNIKSNESVAIKIIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVAKGRLKEELSRKYFQQLISAVGFCHARGVYHRDLKPENLLLDLNGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARRGYEAAKVDIWACGIVLFVLMAGYLPFQDQNIMAMYKKIYKGDFRCPKWFSPDLSRLLIRLLDTNPETRITIPEIMENRWFKKGFKHIKFYIEDDKLCNVVDDDVDSLSEKSLSESDSETEPRRRINTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSGAPVSEIIAKLEEIARVVSFTVRKKDCRVSLEGSREGVRGPLSIAAEIFELTSELVVVEVKKKGGDKAEYEQFCNTELKRGLQNLMLEKSSSSSSLIYDTE | 463 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1285445 | 1287408 | - | Conep01aG0022100.1 | Cone1ag0212 | 430903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0212 | 463 | FunFam | Non-specific serine/threonine protein kinase | 14 | 321 | - | - | |
Cone1ag0212 | 463 | ProSiteProfiles | NAF domain profile. | 328 | 352 | IPR018451 | GO:0007165(InterPro) | |
Cone1ag0212 | 463 | SUPERFAMILY | Protein kinase-like (PK-like) | 20 | 290 | IPR011009 | - | |
Cone1ag0212 | 463 | CDD | CIPK_C | 334 | 445 | - | - | |
Cone1ag0212 | 463 | ProSiteProfiles | Protein kinase domain profile. | 24 | 278 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone1ag0212 | 463 | Pfam | Protein kinase domain | 24 | 278 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone1ag0212 | 463 | FunFam | Non-specific serine/threonine protein kinase | 330 | 448 | - | - | |
Cone1ag0212 | 463 | SMART | serkin_6 | 24 | 278 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone1ag0212 | 463 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 142 | 154 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone1ag0212 | 463 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 9 | 438 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cone1ag0212 | 463 | Gene3D | Kinase associated domain 1, KA1 | 330 | 449 | - | - | |
Cone1ag0212 | 463 | Pfam | NAF domain | 330 | 386 | IPR004041 | GO:0007165(InterPro) | |
Cone1ag0212 | 463 | Gene3D | Transferase(Phosphotransferase) domain 1 | 14 | 328 | - | - | |
Cone1ag0212 | 463 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524(InterPro) | |
Cone1ag0212 | 463 | FunFam | Non-specific serine/threonine protein kinase | 15 | 103 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0212 | Cone-Chr1:1285445 | Cone2ag0573 | Cone-Chr2:3318429 | 3.01E-174 | dispersed | |
Cone1ag0212 | Cone-Chr1:1285445 | Cone5ag1652 | Cone-Chr5:11710174 | 1.37E-304 | wgd | |
Cone1ag0212 | Cone-Chr1:1285445 | Cone6ag0951 | Cone-Chr6:4980591 | 7.25E-271 | wgd | |
Cone1ag0212 | Cone-Chr1:1285445 | Cone9ag0959 | Cone-Chr9:4798124 | 3.35E-270 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82451 | PF04563 | RNA_pol_Rpb2_1 | 5.10E-75 | No_clan | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0212 | - | - | - | 0.0 |