Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0212 ATGGCGGATGAATTCAAAAAGAACAGCAGCAGCAGCAAGAAGGATTTCCAGTCTCTTCTCTTAGGTCGTTACGAGGTCGGGAAGCTTCTCGGCCATGGAACCTTCGCCAAAGTCTACCACGCTCGGAACATAAAATCGAACGAAAGCGTAGCTATCAAGATCATCGACAAGGAGAAGATCTTGAAAGGAGGTCTAATCGCTCACATCAAGCGCGAGATCTCGATTCTCCGCCGTGTTCGTCATCCGAACATAGTCCAACTCTTCGAGGTCATGGCTACGAAGGCCAAGATTTACTTCGTCATGGAGTATGTTCGCGGCGGCGAGCTTTTCAAGAAGGTCGCGAAAGGTCGGTTGAAGGAAGAACTATCTCGGAAATATTTTCAGCAATTGATCTCCGCCGTCGGATTCTGCCACGCTCGCGGCGTTTACCACCGCGACCTGAAGCCAGAAAACCTCTTGCTCGACCTAAATGGTGATCTGAAAGTCTCCGATTTCGGACTCAGCGCCGTATCAGATCAGATTCGTCAGGACGGCTTGTTCCATACATTTTGCGGCACCCCGGCTTACGTTGCGCCTGAAGTTCTAGCTCGACGCGGCTATGAAGCTGCTAAGGTAGATATCTGGGCCTGTGGAATCGTTCTATTTGTTCTTATGGCTGGCTATTTACCATTCCAGGACCAGAATATCATGGCAATGTATAAGAAAATCTACAAAGGCGACTTCAGGTGCCCTAAGTGGTTCTCACCAGACCTGAGTCGGCTCCTAATTCGCCTTCTCGATACAAATCCTGAAACCAGAATCACAATCCCTGAAATTATGGAAAACAGATGGTTCAAAAAAGGGTTTAAGCATATAAAATTCTATATAGAGGATGATAAGCTCTGTAATGTTGTAGATGATGATGTCGATTCTTTATCCGAAAAATCTTTATCCGAATCGGATTCAGAAACCGAGCCAAGAAGGAGGATTAATACTTCCTTACCTAGACCGGCTAGTTTAAACGCATTTGATATAATATCCTTTTCGCCCGGTTTTGATCTTTCCGGTTTGTTTGAAGATGGAGGAGAGGAAGCTAGGTTTGTTTCCGGTGCTCCCGTTTCTGAAATTATAGCGAAACTAGAGGAGATTGCAAGAGTGGTGAGCTTTACAGTGAGGAAGAAGGATTGTAGAGTGAGCTTGGAAGGGTCAAGAGAAGGTGTAAGGGGGCCATTATCAATTGCAGCTGAGATTTTCGAGTTGACATCTGAATTGGTAGTTGTGGAGGTGAAGAAGAAAGGAGGGGATAAAGCAGAGTATGAACAATTCTGTAATACAGAATTGAAGCGTGGATTGCAGAATTTGATGCTTGAAAAGTCTTCATCTTCGTCAAGCTTGATTTATGATACGGAATAG 1392 45.19 MADEFKKNSSSSKKDFQSLLLGRYEVGKLLGHGTFAKVYHARNIKSNESVAIKIIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVAKGRLKEELSRKYFQQLISAVGFCHARGVYHRDLKPENLLLDLNGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARRGYEAAKVDIWACGIVLFVLMAGYLPFQDQNIMAMYKKIYKGDFRCPKWFSPDLSRLLIRLLDTNPETRITIPEIMENRWFKKGFKHIKFYIEDDKLCNVVDDDVDSLSEKSLSESDSETEPRRRINTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSGAPVSEIIAKLEEIARVVSFTVRKKDCRVSLEGSREGVRGPLSIAAEIFELTSELVVVEVKKKGGDKAEYEQFCNTELKRGLQNLMLEKSSSSSSLIYDTE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1285445 1287408 - Conep01aG0022100.1 Cone1ag0212 430903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0212 463 FunFam Non-specific serine/threonine protein kinase 14 321 - -
Cone1ag0212 463 ProSiteProfiles NAF domain profile. 328 352 IPR018451 GO:0007165(InterPro)
Cone1ag0212 463 SUPERFAMILY Protein kinase-like (PK-like) 20 290 IPR011009 -
Cone1ag0212 463 CDD CIPK_C 334 445 - -
Cone1ag0212 463 ProSiteProfiles Protein kinase domain profile. 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0212 463 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0212 463 FunFam Non-specific serine/threonine protein kinase 330 448 - -
Cone1ag0212 463 SMART serkin_6 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0212 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0212 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 438 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone1ag0212 463 Gene3D Kinase associated domain 1, KA1 330 449 - -
Cone1ag0212 463 Pfam NAF domain 330 386 IPR004041 GO:0007165(InterPro)
Cone1ag0212 463 Gene3D Transferase(Phosphotransferase) domain 1 14 328 - -
Cone1ag0212 463 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Cone1ag0212 463 FunFam Non-specific serine/threonine protein kinase 15 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0212 Cone-Chr1:1285445 Cone2ag0573 Cone-Chr2:3318429 3.01E-174 dispersed
Cone1ag0212 Cone-Chr1:1285445 Cone5ag1652 Cone-Chr5:11710174 1.37E-304 wgd
Cone1ag0212 Cone-Chr1:1285445 Cone6ag0951 Cone-Chr6:4980591 7.25E-271 wgd
Cone1ag0212 Cone-Chr1:1285445 Cone9ag0959 Cone-Chr9:4798124 3.35E-270 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82451 PF04563 RNA_pol_Rpb2_1 5.10E-75 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0212 - - - 0.0