Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0216 ATGGAGCAAAATGTAAAGATTTTATATTGTTGGGTTTTCTTCTGTAATTTCTTTGGGATGATGGATTTTCTGGGTGCTTCTGATAGTCTTCTATCTCCAAAGGGTGTTAACTATGAAGTGGCTGCATTAATGTCTGTGAAGAGTAAGATGAGGGATGAGTTGCATGTAATGGACGGTTGGGATATAAACTCGGTTGATCCTTGCACTTGGAACATGGTTGCTTGCTCTTCTGAGGGATTTGTTGTTTCTCTTGAAATGGCTAGTACAGGCTTATCGGGTATTATTTCTCCAAGCATAGGGAATCTCAGTCACCTTAGAACAATGTTATTACAAAACAATCAGTTATTCGGTTCTATCCCAGACGAGATAGGAAAGATTTTGGATCTTCAAACTGTGGACCTCTCTGGAAACCAGTTAGAGGGGCCAGTTCCAACTTCATTGGGGTTTCTAAATCATCTAAATTACCTGCGGCTTAGTAGAAACAAGTTAAGTGGTCAGATTCCCAAAGCTGTTGCAAATCTTACAGGTCTTTCGTTCTTGGATTTATCATATAATAATCTCAGTGGTCCGATTCCAACAATACTAGCAAAAGGCTACAGCTTTCTTTGTGTCTATTCATCGGACCAAGTTTGCCTTCCCATTTCAAAACCCATAAATGAAACAAGTCCTTCTCGGAAAGTTATGGCTCACAATCATCATAGGGTGCTTTCTGTTGCTATAGTTATCAGTTGCACGTTTGTGGTTTCCATTGTGTTGCTTGTTTGTTCAGTGCATTGGTACCGATCCCGACTACTCTTTGCATCTTATGTGCAGCAAGACTATGAATTTGATATGGGTCATTTAAAGAGGTTCTCCTTTCGAGAATTGCAAAGTGCCACTTGCAATTTTAGTCCGAAAAACATCCTAGGACAAGGTGGTTTTGGGGTTGTTTACAAAGGGTATCTTCCTAATAGGACGATAGTGGCAGTTAAGAGACTCAAGGATCCAAATTGCACTGGTGAAGTTCAGTTTCAAACTGAAGTTGAGATGATCGGCTTGGCATTGCACCGTAATCTCTTGCGTTTATACGGATTCTGTATGACCCCGAATGAGAGATTGCTCGTTTATCCTTATATGCCTAATGGAAGCGTTGCTGATCGCTTAAGAGATATTGGCCGAGAAAAGCCGTCCTTAGATTGGAACATGCGGCTATGCATAGCCCTAGGTGCTGCTCGTGGGCTTGTATACTTACACGAGCAGTGCAACCCGAGAATAATTCACAGGGATGTAAAGGCTGCTAATATTTTACTTGATGAACGCTTTGAAGCCATAGTAGGGGATTTCGGCCTTGCTAAGCTGTTGGATCGGAGGGACTCCCATGTAACTACTGCCGTTCGAGGTACTGTGGGACATATTGCACCGGAATATCTCTCAACCGGACAGTCTTCTGAAAAGACCGATGTTTTTGGTTTCGGTACATTGCTTTTGGAGCTTATAACGGGCCAAAAGGCATTAGATGCTGGAAATGGTCAGGTCCAGAAAGGAATGATCCTCGATTGGGTTAGAACATTACATGAAGGGAAGAGGTTGGAAGTGCTAGTGGATAGGGATCTAAGAGGATGTTTCGATCCGGCCGAGCTGGAAATGGCTGTAGAGTTGGCTCTTCAATGCACTCAGTCAAATCCAAATCTCCGACCAAAGATGTCAGAAGTCTTGAAGGTTCTGGAAGGTCTTGTCGGACCATCTGGAGACGTGGACGAATCACAAGGCGGTGGAGCCCACCTTTATGATGATGAAAGGGCGTGCAGTTTCCCCCAGGATTATCATGGCATTCACGACGGATCCTCGTTCATCATCGAAGCAATGGAACTTTCTGGACCTCGATGA 1866 43.41 MEQNVKILYCWVFFCNFFGMMDFLGASDSLLSPKGVNYEVAALMSVKSKMRDELHVMDGWDINSVDPCTWNMVACSSEGFVVSLEMASTGLSGIISPSIGNLSHLRTMLLQNNQLFGSIPDEIGKILDLQTVDLSGNQLEGPVPTSLGFLNHLNYLRLSRNKLSGQIPKAVANLTGLSFLDLSYNNLSGPIPTILAKGYSFLCVYSSDQVCLPISKPINETSPSRKVMAHNHHRVLSVAIVISCTFVVSIVLLVCSVHWYRSRLLFASYVQQDYEFDMGHLKRFSFRELQSATCNFSPKNILGQGGFGVVYKGYLPNRTIVAVKRLKDPNCTGEVQFQTEVEMIGLALHRNLLRLYGFCMTPNERLLVYPYMPNGSVADRLRDIGREKPSLDWNMRLCIALGAARGLVYLHEQCNPRIIHRDVKAANILLDERFEAIVGDFGLAKLLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGTLLLELITGQKALDAGNGQVQKGMILDWVRTLHEGKRLEVLVDRDLRGCFDPAELEMAVELALQCTQSNPNLRPKMSEVLKVLEGLVGPSGDVDESQGGGAHLYDDERACSFPQDYHGIHDGSSFIIEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1314311 1319162 + Conep01aG0022500.1 Cone1ag0216 430907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0216 621 FunFam Somatic embryogenesis receptor kinase 1 265 371 - -
Cone1ag0216 621 SUPERFAMILY L domain-like 38 200 - -
Cone1ag0216 621 SMART serkin_6 296 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0216 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0216 621 ProSiteProfiles Protein kinase domain profile. 296 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0216 621 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 36 196 - -
Cone1ag0216 621 Gene3D Transferase(Phosphotransferase) domain 1 372 572 - -
Cone1ag0216 621 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524(InterPro)
Cone1ag0216 621 Gene3D Ribonuclease Inhibitor 36 212 IPR032675 -
Cone1ag0216 621 SUPERFAMILY Protein kinase-like (PK-like) 278 569 IPR011009 -
Cone1ag0216 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 621 - -
Cone1ag0216 621 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Cone1ag0216 621 Gene3D Phosphorylase Kinase; domain 1 266 371 - -
Cone1ag0216 621 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515(InterPro)
Cone1ag0216 621 Pfam Protein tyrosine and serine/threonine kinase 300 567 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0216 621 FunFam Somatic embryogenesis receptor-like kinase 1 372 582 - -
Cone1ag0216 621 Pfam Leucine rich repeat 129 187 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0216 Cone-Chr1:1314311 Cone8ag0675 Cone-Chr8:6742879 9.01E-186 dispersed
Cone1ag0216 Cone-Chr1:1314311 Cone15ag1009 Cone-Chr15:8168530 9.97E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82453 PF08161 NUC173 3.50E-54 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0216 - - - 0.0