Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0219 ATGGATTCTAGCTTCAATTACAATCACCACAGCCTGTTCTTCATGAATGATCTTGATCCTCAACAACAAGAAGAAAAAAGTAGCTCTGAATCTCCTCCTTCCATGGCTAACTTAAACAATCATCACTACACCTCCAAGCTCATTCCCTCCTCCTCCCCCTCCAAAAAGTCCAGGAGAGGGATACATAAAAGAGTGGTGACAGTGCCAATGAAGGAGGTAGAAGGATCAAGGCTTAAGGGTGAAATAAGCAACAATAGTCCTCCTTCTGATTCTTGGGCGTGGAGAAAGTACGGTCAAAAACCCATCAAAGGCTCCCCTTATCCCAGAGGTTATTACAGATGTAGTAGCTCAAAGGGCTGCCCAGCAAGGAAACAAGTCGAAAGGAGCCAAGTGGACCCCACTCTTTTACTCATCACTTACTCGGCCGAACACAACCATCTTGGTCCCACTTCTAGAAACAGCAACACCCACCACTCCTCCTCCGCAGTGTCCGCCGTCACCGCCGCCGCCAGCAGACCTACTTGCAAGCCAGAAATTGTTAACAACAACGGAGTACCCGACCCGGAACTGCAGCACGAGGAGAAGTTCGCGGATCTAGGCGACGAGTCGCTGATCTTCACGTGCGATGAGTTCAGCTGGTTTAGAGACATGGAAACGACGTCGTCTACGATACTGGAGTGTCCCATTTTCGCGGAGGAGAGAAACGCGTTTTTCCCGATGAGGGAAGAGGACGAGTCGCTCTTCGCCGATCTGGGCGAGTTGCCAGAGTGCTCAATCGTGTTGCGAAGCTGTGGGCCCACAGATACAGATGTGGACCCGCGACCCCATTATGTGGTACCACGAGCTGAGATCCTCGGACACGTGTCCATCTGA 873 50.97 MDSSFNYNHHSLFFMNDLDPQQQEEKSSSESPPSMANLNNHHYTSKLIPSSSPSKKSRRGIHKRVVTVPMKEVEGSRLKGEISNNSPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSQVDPTLLLITYSAEHNHLGPTSRNSNTHHSSSAVSAVTAAASRPTCKPEIVNNNGVPDPELQHEEKFADLGDESLIFTCDEFSWFRDMETTSSTILECPIFAEERNAFFPMREEDESLFADLGELPECSIVLRSCGPTDTDVDPRPHYVVPRAEILGHVSI 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1359210 1361115 + Conep01aG0023100.1 Cone1ag0219 430910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0219 290 SMART WRKY_cls 88 148 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0219 290 MobiDBLite consensus disorder prediction 17 64 - -
Cone1ag0219 290 ProSiteProfiles WRKY domain profile. 83 149 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0219 290 Gene3D WRKY domain 76 150 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0219 290 SUPERFAMILY WRKY DNA-binding domain 84 146 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0219 290 Pfam WRKY DNA -binding domain 90 146 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0219 290 FunFam WRKY transcription factor 65 75 149 - -
Cone1ag0219 290 MobiDBLite consensus disorder prediction 17 55 - -
Cone1ag0219 290 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 22 258 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0219 Cone-Chr1:1359210 Cone6ag1143 Cone-Chr6:8641222 3.76E-36 dispersed
Cone1ag0219 Cone-Chr1:1359210 Cone5ag1648 Cone-Chr5:11645503 1.46E-142 wgd
Cone1ag0219 Cone-Chr1:1359210 Cone8ag1525 Cone-Chr8:11488264 1.60E-42 wgd
Cone1ag0219 Cone-Chr1:1359210 Cone9ag0947 Cone-Chr9:4708149 3.25E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45409 PF00069 Pkinase 1.00E-42 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0219 - - - 0.0