Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0222 ATGATGTCCAGATCGTATACAAATCTCTTAGATCTAGCGTCCGGAAACTTTCCGGTAATGGGCCGGGAAAAGAAACGGCTGCCCCGAGTAATGACCGTTCCAGGTGTCATTTCCGAGCTAGATGATGATCAAGCCAATAGTGTAACTTCAGATGCACCATCTTCTGCCGTTCAAGACCGAATAATCATAGTATCAAATCAGTTACCAGTCAAAGCTAAACGTAGACCGGATAATAAAGGGTGGAGTTTCAGTTGGGACGAGGACTCCTTGTTATTACAGCTAAAAGACGGATTACCCGAGGATATGGAGGTTCTATATGTAGGCTCGTTAAGGGTCGATGTAGATTTTTCCGAGCAAGATGATGTCTCTCAGCTTTTATTGGACCGGTTTAAGTGTGTTCCTGCATTCTTACCGGCTGATATTTTGTCTAAATTCTATCATGGATTTTGTAAACAGAATTTATGGCCATTGTTTCATTACATGCTCCCTTTTTCGGCTAGTCATGGTGGAAGGTTTGACCGTTCATTATGGGAAGCTTATGTGGCGGCAAATAAGATCTTTTCACAGAGGGTGATTGAGGTGATAAATCCGGAAGATGATTATGTTTGGATCCATGATTACCATTTAATGGTTCTTCCTACTTTCTTAAGAAGAAGATTTAATAGATTGAGAATGGGGTTTTTTCTTCATAGCCCGTTTCCTTCTTCGGAAATATACAGGACTTTACCTGTAAGAGAAGAAATTCTAAAAGCCCTTTTAAATTCGGATCTCATTGGATTCCATACATTTGACTATGCCCGACATTTTCTCTCTTGTTGTAGTCGAATGTTGGGTTTAGAGTATCAATCCAAAAGGGGTTATATTGGGTTGGAATATTACGGAAGAACTGTTGGGATTAAGATCATGCCTGTTGGAATCCACATGGGTCAGATTGAGACAGTTTTAAGACAAGCCGATAAGGAGTGGAGAGTAGGGGAGCTTAAACAACAATTTGAAGGAAAAACTGTGTTGCTTGGAGTAGATGACATGGATATTTTTAAAGGTGTTAACCTAAAGATTTTGGCAATGGAGCAGTTATTAAAACAACACCCGAAATGGCAAGGAAGAGCTGTTTTGGTCCAAATTGCAAACCCAGCTCGAGGAAGTGGAAAGGATCTAGAGGAAATCCAGGAAGAAATCCGTGTAAGTTGTAAGAGAATCAATGATAGTTTTAGACGAACAAATTATGAACCCATTGTCTTCATTGATAAAACTGTTTCTTTAAGTGAAAGAGCTGCTTATTACACCATTGCAGAATGTGTTGTTGTAACAGCTGTAAGAGACGGAATGAATCTTACACCTTACGAGTATATAGTATGTAGGCAAGGAATCTCTGAAGCAGAATCTAGCCTGGAATCTAATGGTCCGAAAAAGAGCATGTTGGTAGTTTCAGAATTTATCGGATGTTCCCCCTCCTTAAGTGGGGCCATTAGGGTCAACCCATGGAACATAGAAGCAACGGCCGAGGCAATGAATGAGTCAATTTCAATGCCAGAGGGAGAGAAACAGTTAAGGCATGAGAAGCATTATAGATATGTTAGTACACATGATGTTGGGTATTGGTCTAAGAGCTTCTTCAATGACATGGAAAGGACATGTAAGGACCATTTTAGAAGAAGATGTTGGGGAATTGGGTTGAGCTTCGGGTTTCGTGTCGTGGCTTTGGACCCGAGTTTCCGGAAGCTGTCTATTGATGCCATTGTTTCGGCTTATTGTCGGTCGAAGAATCGGACTATACTTTTGGATTATGATGGGACCGTTATGCCCCAAACCTCGATTGATAAGAAACCTAGTTATGAGGTTATCTCGATCATTAATGAACTATGTAGCGATTTGAAAAATACCGTTTTTGTTGTTAGTGGAAGAGGAAGGGAGAGTTTAGGGCAGTGGTTTGCTCCATGCAAGAAACTTGGGATTGCAGCTGAACATGGGTATTTTATAAGGTGGTCGGCAAACGAGGAGTGGGAAAATTGTGGGCAGAGTGGGGATTTTGGATGGATAGAGATGGCTAAGCCGGTTATGAATCTATATACGGAGGCGACTGATGGGTCCTCCATTGAAACTAAGGAGAGTGCTTTGGTTTGGCACCATCATGATGCAGACCCAGGTTTTGCGTCGTGCCAGGCTAAGGAGTTGTTGGACCATCTAGAAAGTGTTCTAGCCAATGAACCTGTAGCTGTCAAAGCTGGTCAGTTTATTGTTGAAGTAAAGCCACAGGGTGTGAGCAAAGGGTTAGTTGCTGAAAGGATATTCACTAAACTAGCCGAGAAAGGAAGGCAGGCCGATTTCGTCCTTTGTATAGGGGATGACCGATCGGATGAAGAAATGTTTGAGATCATAGACAGTGCAATGGCAAGTCAGACCCTATCTTCCAACACATCAGTTTTTGCCTGCACTGTCGGACAAAAACCAAGCAAGGCAAAATACTACTTGGACGATACAACAGAAGTCATTAACATGCTTGAGGCCCTAGCGGAAGCTTCCGATCCCTCTTCACCCCCTGAGTCACCTTGA 2553 42.22 MMSRSYTNLLDLASGNFPVMGREKKRLPRVMTVPGVISELDDDQANSVTSDAPSSAVQDRIIIVSNQLPVKAKRRPDNKGWSFSWDEDSLLLQLKDGLPEDMEVLYVGSLRVDVDFSEQDDVSQLLLDRFKCVPAFLPADILSKFYHGFCKQNLWPLFHYMLPFSASHGGRFDRSLWEAYVAANKIFSQRVIEVINPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGIHMGQIETVLRQADKEWRVGELKQQFEGKTVLLGVDDMDIFKGVNLKILAMEQLLKQHPKWQGRAVLVQIANPARGSGKDLEEIQEEIRVSCKRINDSFRRTNYEPIVFIDKTVSLSERAAYYTIAECVVVTAVRDGMNLTPYEYIVCRQGISEAESSLESNGPKKSMLVVSEFIGCSPSLSGAIRVNPWNIEATAEAMNESISMPEGEKQLRHEKHYRYVSTHDVGYWSKSFFNDMERTCKDHFRRRCWGIGLSFGFRVVALDPSFRKLSIDAIVSAYCRSKNRTILLDYDGTVMPQTSIDKKPSYEVISIINELCSDLKNTVFVVSGRGRESLGQWFAPCKKLGIAAEHGYFIRWSANEEWENCGQSGDFGWIEMAKPVMNLYTEATDGSSIETKESALVWHHHDADPGFASCQAKELLDHLESVLANEPVAVKAGQFIVEVKPQGVSKGLVAERIFTKLAEKGRQADFVLCIGDDRSDEEMFEIIDSAMASQTLSSNTSVFACTVGQKPSKAKYYLDDTTEVINMLEALAEASDPSSPPESP 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1385340 1389196 + Conep01aG0023400.1 Cone1ag0222 430913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0222 850 NCBIfam HAD-IIB family hydrolase 592 796 IPR006379 -
Cone1ag0222 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Cone1ag0222 850 NCBIfam trehalose-phosphatase 587 838 IPR003337 GO:0005992(InterPro)
Cone1ag0222 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone1ag0222 850 CDD HAD_TPP 592 832 - -
Cone1ag0222 850 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 719 849 - -
Cone1ag0222 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
Cone1ag0222 850 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cone1ag0222 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone1ag0222 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0005992(InterPro)
Cone1ag0222 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone1ag0222 850 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 589 706 - -
Cone1ag0222 850 Gene3D Glycogen Phosphorylase B; 314 527 - -
Cone1ag0222 850 Gene3D - 590 685 IPR023214 -
Cone1ag0222 850 Gene3D - 718 846 IPR023214 -
Cone1ag0222 850 FunFam Trehalose-6-phosphate synthase 2 673 752 - -
Cone1ag0222 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cone1ag0222 850 FunFam Alpha,alpha-trehalose-phosphate synthase 314 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0222 Cone-Chr1:1385340 Cone3ag1433 Cone-Chr3:33088889 0 dispersed
Cone1ag0222 Cone-Chr1:1385340 Cone5ag1644 Cone-Chr5:11621706 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0222 K16055 - rcu:8275177 1526.53