Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0227 ATGGCAATCGAACAGGCCAAGCTGTCGACTGAGGAGGTTCTAAGGAGGGACATCCCATGGGAGACATATATGACAACTAAACTGATTAGTGGAACGAGTCTTCAGCTATTAAGGCGTTACGATAACAGGCCAGAAAGCTACAGAGCTCAATTGTTTGATGAAGATGGCCCTTCTTATGTTAGAGTCTTTGTTAGCATTCTGCGTGATATTTTCAAGGAGGAGACAGTGGAATATGTTCTTGCATTAATTGATGAAATGCTTACCGCAAACCCGAAAAGAGCAAGGTTGTTCCATGATAATTCTATTGCAGATGAAGGCACTTATGAGCCTTTCTTAAGATTGCTTTGGCGTGGTAACTGGTTCATTCAAGAAAAGAGCTGCAAAATACTTGCTTTGATAGTGAGTTCTAGGGAAAAAAATAAGGATGACATTGCTGCAAATGGAGATGCCTCAAACTCGAAAAAAACGATCATTTCTACAACTGATGTGTTGAAAGGATTGGTAGAATGGCTTTGTGCGCAGCTTAAGGAGTCTTCTCATCCTAATCGTGGCGTCCAAGTTGCCATCAATTGCCTTGCAACTTTACTCAAGGAACCAGTTGCCAGATCCTCATTTGTTCAGGCAGATGGAGTGAAACTTCTCATTCCTTTCATTTCTCCTGCTTCCACACAACAATCTATACAGCTGCTCTATGAGACCTGTCTCTGTTTCTGGCTCTTATCCTACTATGAGCCTGCAATTGAATTTCTAGCTACCTCTAGAGCACTTCCAAGGCTGACCGAAGTAGTTAAGAGTTCCACAAAGGAGAAGGTTGTCCGAGTTGTTGTCCTGACCTTAAAGAACTTGCTGTCCAAAGGCACATTTGGTGCTCAAATGGTGGACCTTGGTCTACCACAAACCGTTCAAAGCTTAAAGACACAGGCATGGAATGATGAGGACCTGTTGGAAGCTTTGAATCAACTTGAGGTAGGGCTAAAGGATAACATCAAAAAACTAAGTTCTTTCGACAAATATAAGCAAGAAGTCCTCCTTGGTCATCTTGACTGGTCTCCTATGCACAAAGATCCTCTCTTCTGGCGTGAAAATATTACCAACTTTGAAGAGAATGATTTCCAGATTCTTCGGGTTCTAATTACGATTCTGGACACATCGAACGATGCGAGGGCTCTGGCAGTTGCTTGCTATGACTTGTCACAGTTCATTCAGCAGCATCCAGCTGGAAAAGTCATCGTGACGGACCTCAAGGCCAAAGAACGGGTGATGAAGTTGATGAATCATGAGAACGCAGAGGTTACCAAAAATGCTCTTCTTTGTATACAAAGGCTCTTACTAGGTGCGAAATATGCAAGCTTCTTGCAAGTTTAA 1365 42.64 MAIEQAKLSTEEVLRRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLFDEDGPSYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDNSIADEGTYEPFLRLLWRGNWFIQEKSCKILALIVSSREKNKDDIAANGDASNSKKTIISTTDVLKGLVEWLCAQLKESSHPNRGVQVAINCLATLLKEPVARSSFVQADGVKLLIPFISPASTQQSIQLLYETCLCFWLLSYYEPAIEFLATSRALPRLTEVVKSSTKEKVVRVVVLTLKNLLSKGTFGAQMVDLGLPQTVQSLKTQAWNDEDLLEALNQLEVGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPLFWRENITNFEENDFQILRVLITILDTSNDARALAVACYDLSQFIQQHPAGKVIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLLLGAKYASFLQV 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1455604 1458715 + Conep01aG0023900.1 Cone1ag0227 430918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0227 454 Pfam V-ATPase subunit H 7 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone1ag0227 454 Pfam V-ATPase subunit H 331 444 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Cone1ag0227 454 Gene3D - 345 446 IPR038497 -
Cone1ag0227 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
Cone1ag0227 454 SMART arm_5 197 242 IPR000225 GO:0005515(InterPro)
Cone1ag0227 454 SMART arm_5 404 444 IPR000225 GO:0005515(InterPro)
Cone1ag0227 454 FunFam V-type proton ATPase subunit H 345 446 - -
Cone1ag0227 454 PIRSF V-ATP_synth_H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone1ag0227 454 Gene3D - 6 333 IPR011989 -
Cone1ag0227 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone1ag0227 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0227 Cone-Chr1:1455604 Cone5ag0623 Cone-Chr5:2669204 6.26E-58 dispersed
Cone1ag0913 Cone-Chr1:54622932 Cone1ag0227 Cone-Chr1:1455604 7.09E-27 transposed
Cone1ag0227 Cone-Chr1:1455604 Cone5ag1637 Cone-Chr5:11555188 1.74E-305 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0227 K02144 - rcu:8280507 749.584