Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0229 ATGGTGGGCGAAAACTTGTTTCGCTTCTTCATCACTTTTCTGGGTTGCTTCTGCTTTTTGCTGAGATCTATAGATTCCAAGCTTCCTCAAGAAGAAGTTGATGCTCTGGAGGAAATCACTACAATAATGGGTGCAAAATTTTGGAAGTTCAATGCTGATTCTTGTGAGATTGAAATGATCGGATTAACAGCAAATCCGGCAAATGGATCGGAGGGTAGTATTGGGTGTGACTGCAATATGGAGAATAACAGTATCTGTCATGTTGTAAGCATAGTACTTAAAGGTTATAATCTACCCGGAATTCTTCCACCTCAACTCGTCAAACTTCCTTATCTCCGAGAAATTGATTTTGCATACAACTACCTGAGTGGTACAATACCAAAGGAATGGGCTTCAATGAATTTGACTTCTATTTCCGTTCTGGTAAATCGGCTATCTGGAGAAATTCCCGAAGAGCTGGGGAATATAACTTCCCTGATATACTTGTGCCTTGAAGCAAACCAATTTTCTTCTATTCTCCCTTCAAGGCTTGGGAGTTTGAGCAACCTACAATCCCTGTTTCTGTCCTCGAATCAATTAACCGGAAACTTGCCGATGACATTTGCTGGTTTGAAAAACCTGAAAGATTTTAGGATAGATGACAACAACTTCAATGGAAGCATACCCGATTTCATTCAAAATTGGAAGCTACTTGAACGACTAGAAATGCATGCAAGTGGACTTGAGGGACCCATTCCGGAAAACATATCCCTTTTGAGCAACTTAAAGGAGCTAAGAATCAGTGATATTCATGGTCCAAAGCAGGATTTTCCTATGTTGAAAGACATGGCGGGGATGATAAGATTGGTTTTGAGGAACTGTAACCTTTCGGGTCAGTTACCTGCTTATGTCTGGTCATTTAAGAGCATGGAAATGTTGGATCTCAGCTTTAATCACTTAACTGGGGAACTTCCTGTCTCGCTAAACGTGGAGCGGCTTAGATTCATCTTTCTAACAAGCAACTTGCTTAGTGGAAATATACCGGATTCAATCTTGAGAGACGGAACTAATGTTGATCTTTCATACAATAACTTCACTTGGCAGGGACCCGAGCAACATACTTGTAGGGAAAACATGAATCTAAACCTCAACTTGTATAGAAGCTCTTCAATGGGGAGTAATAACTCAAGGGGAGAACTTTCATGCTTGAAGGATTTCAAATGTTCAAGATATTCAAATTGTTTTGGAGTCAATTCTGGTGGAAACGACATAACCATAAAGGAAAACAAAGAAAATGTGTTATACGAAGGCGATGCAGAAGTTGAAGGGGGAGCAGCAAATTTCTTCATTAATGATAATAATTGGGGATTTAGTAGTACAGGAGATTTCATGGATGATTATGATTACCAAAATACCCGTTACACTTTTACTCTGCCCTTTTCAAATAGCAATATATCCGGATTGTATTCAACTGCTCGAATGTCTCCTATAGTCCTCACTTATTTTCATTATTGCTTGGAAAATGGGAACTACACTGTGAATCTTCACTTTGCGGAGATAGAATTTACAAATGACAAAACGTATAGGAGTCTTGGGAAAAGGACTTTTGATATCTACATTCAGGATAAATTAGTGCGGAAGAACTTTGATATTGAAGAAGAAGCAGGCATGGCTCAAAAGCCATTACAGGAAACTATTCTAGATGTTATTGTGACTAATAATGTCATAGAGATACAATTTTATTGGGCAGGAAAAGGGACCACAAGAATCCCTGAAAGAGGAGTTTACGGTCCCCTAATATCAGCAATTTCTGTGCTTTCTGAATCTGGAGTTTGCTCAAATGATGGATCTAAGGGAACTATTCGTATCGTCATTGGAGTCATTGTAGGAGTAATATGCCTTGTATTAATGATTCTTGGAATTTCATGGTGGAAAGGCATCTTTCCTGGAAAAAAAGGAAGAAAGAAAGGTGGAGCTGACATACCAAGAGTAGATGTACAGGTGGGGACTTTCACCTTGAAACAAATAAAAGCTGCTACGAATGATTTCTATCCTTCTAACAAGATTGGGGAAGGCGGTTTCGGTCCCGTCTTCAAGGGACACTTACTGGATGGTACTGCTATAGCAGTTAAGCAGCTCTCGTCTGAATCAAGGCAAGGAAATCGCGAGTTTCTGAATGAAATGGGGATGATATCTTGTTTACAACATCCTAATCTTGTTAAGCTTCATGGATGCTGTATTGAAGGGGATCAGTTACTGCTTGTTTATGAATACATGGAAAACAACAGCCTTGCCCGTGCCTTGTTTGTCTCAGATTATGATCCGGTTAAACTAGACTGGCCTACAAGGGTTAGGATCTGTATCGGGATAGCAAGAGGCCTAGCATTTCTTCACGAGGAATCAAGGCTTAAAATCATTCATAGAGACATCAAAGCTACTAATGTACTATTAGATGGGGAATTGAATCCGAAAATATCAGATTTTGGATTAGCTAAACTTTTTGATGAAGAAGGGAAGACACATATGAGCACCCGAGTTGCCGGGACAATAGGATATATGGCTCCAGAATATGCACTTTGGGGACACTTAACCCAGAAGACAGATGTTTACAGTTTCGGAGTTGTGGCCTTGGAAATTGTCAGTGGGAAGAACAATGATTTTCTCCCGAGCAACCATTGCGTTTGCCTTCTCGATTGGGCTTGTTATTTGCAACAAACAAGGAAATTGATGGAAATAGTTGATGAGAAGTTGGGGTCCGATTTCGATGAGAAAGAAGCGGAAGCAATGATCAAAGTGGCTATTCTTTGCACTAATGCGTCCCCTTCAATTAGACCTACAATGTCCGAGGTTCTAAGAATGCTCGAAGGAAGAACAAGTATTCTGGAAGTTATCCAGGAATCGGGTTCTTATACCGATGATTTGAGGTTCAAGGCCTTGAGAAGCTTCCGTCAAGCACAGCAAAATCAAAATGCAGATGGAAACCAAATTCTTCAAAATTCAACAAACAGGGGCAGTACGGTTATTAGCTCGTCATCTACTACAACATCGAGCCATGGTTTCCATGAAATCCATCCCGAATCATCACAATCATCTTGA 3075 40.13 MVGENLFRFFITFLGCFCFLLRSIDSKLPQEEVDALEEITTIMGAKFWKFNADSCEIEMIGLTANPANGSEGSIGCDCNMENNSICHVVSIVLKGYNLPGILPPQLVKLPYLREIDFAYNYLSGTIPKEWASMNLTSISVLVNRLSGEIPEELGNITSLIYLCLEANQFSSILPSRLGSLSNLQSLFLSSNQLTGNLPMTFAGLKNLKDFRIDDNNFNGSIPDFIQNWKLLERLEMHASGLEGPIPENISLLSNLKELRISDIHGPKQDFPMLKDMAGMIRLVLRNCNLSGQLPAYVWSFKSMEMLDLSFNHLTGELPVSLNVERLRFIFLTSNLLSGNIPDSILRDGTNVDLSYNNFTWQGPEQHTCRENMNLNLNLYRSSSMGSNNSRGELSCLKDFKCSRYSNCFGVNSGGNDITIKENKENVLYEGDAEVEGGAANFFINDNNWGFSSTGDFMDDYDYQNTRYTFTLPFSNSNISGLYSTARMSPIVLTYFHYCLENGNYTVNLHFAEIEFTNDKTYRSLGKRTFDIYIQDKLVRKNFDIEEEAGMAQKPLQETILDVIVTNNVIEIQFYWAGKGTTRIPERGVYGPLISAISVLSESGVCSNDGSKGTIRIVIGVIVGVICLVLMILGISWWKGIFPGKKGRKKGGADIPRVDVQVGTFTLKQIKAATNDFYPSNKIGEGGFGPVFKGHLLDGTAIAVKQLSSESRQGNREFLNEMGMISCLQHPNLVKLHGCCIEGDQLLLVYEYMENNSLARALFVSDYDPVKLDWPTRVRICIGIARGLAFLHEESRLKIIHRDIKATNVLLDGELNPKISDFGLAKLFDEEGKTHMSTRVAGTIGYMAPEYALWGHLTQKTDVYSFGVVALEIVSGKNNDFLPSNHCVCLLDWACYLQQTRKLMEIVDEKLGSDFDEKEAEAMIKVAILCTNASPSIRPTMSEVLRMLEGRTSILEVIQESGSYTDDLRFKALRSFRQAQQNQNADGNQILQNSTNRGSTVISSSSTTTSSHGFHEIHPESSQSS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1463415 1471075 + Conep01aG0024100.1 Cone1ag0229 430920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0229 1024 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 645 751 - -
Cone1ag0229 1024 SUPERFAMILY Protein kinase-like (PK-like) 658 948 IPR011009 -
Cone1ag0229 1024 SMART serkin_6 676 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0229 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 959 - -
Cone1ag0229 1024 Pfam Malectin domain 407 596 IPR021720 -
Cone1ag0229 1024 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Cone1ag0229 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0229 1024 ProSiteProfiles Protein kinase domain profile. 676 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0229 1024 Pfam Leucine Rich Repeat 303 321 IPR001611 GO:0005515(InterPro)
Cone1ag0229 1024 Pfam Leucine Rich Repeat 182 204 IPR001611 GO:0005515(InterPro)
Cone1ag0229 1024 Gene3D - 405 602 - -
Cone1ag0229 1024 Gene3D Phosphorylase Kinase; domain 1 643 751 - -
Cone1ag0229 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 974 IPR051824 -
Cone1ag0229 1024 MobiDBLite consensus disorder prediction 981 1024 - -
Cone1ag0229 1024 Gene3D Ribonuclease Inhibitor 198 270 IPR032675 -
Cone1ag0229 1024 Gene3D Transferase(Phosphotransferase) domain 1 752 962 - -
Cone1ag0229 1024 CDD STKc_IRAK 682 949 - -
Cone1ag0229 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Cone1ag0229 1024 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Cone1ag0229 1024 SUPERFAMILY L domain-like 84 320 - -
Cone1ag0229 1024 Gene3D Ribonuclease Inhibitor 48 197 IPR032675 -
Cone1ag0229 1024 Gene3D Ribonuclease Inhibitor 271 391 IPR032675 -
Cone1ag0229 1024 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0229 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0229 Cone-Chr1:1463415 Cone6ag0207 Cone-Chr6:977819 9.78E-217 dispersed
Cone5ag1635 Cone-Chr5:11545512 Cone1ag0229 Cone-Chr1:1463415 1.19E-56 dispersed
Cone9ag0939 Cone-Chr9:4642129 Cone1ag0229 Cone-Chr1:1463415 2.87E-46 dispersed
Cone1ag0229 Cone-Chr1:1463415 Cone5ag1634 Cone-Chr5:11537601 2.75E-252 wgd
Cone1ag0229 Cone-Chr1:1463415 Cone6ag0206 Cone-Chr6:969913 8.71E-210 wgd
Cone1ag0229 Cone-Chr1:1463415 Cone6ag0936 Cone-Chr6:4814838 0 wgd
Cone1ag0229 Cone-Chr1:1463415 Cone9ag0235 Cone-Chr9:991865 6.98E-214 wgd
Cone1ag0229 Cone-Chr1:1463415 Cone9ag0938 Cone-Chr9:4639911 4.27E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82454 PF05564 Auxin_repressed 2.00E-53 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0229 - - - 0.0