Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0233 ATGGAAACGAAGAGTGTGGTGAGGTTTAAACTAGGGAAACAGTCATCGTTAGCGCCGGAGAGGGATCGAGGAGAGGCGGCGGAGAAGGAGGCCGCGGCGGAGGAGGACGAGCAGCAGCAGGACGATGTGGTGGAGATAGATCCGAGAGTGAGGTTGATGTATTTAGCTAACGAAGGTGATATGGAGGGGATTAAGGAGCTTTTGGATTCTGGAATCGACGTTAATTTTAGGGATATTGATGATCGGACGGCCCTTCATGTCGCTGCTTGCCAGGGATTTATCGACGTCGTTGATTTCTTGCTCCGGCGAGGCGCTGTAGTTGACACCAAAGATCGATGGGGTAGCACGCCCCTTGCAGATGCTCTACACTACAGAAATCATGATGTGATCAAGCTTTTGGAGAGTCATGGTGCAAAGCCTTTGATGGCTCCAATGCACGTCAAAAATGCCCGTCAAGTTCCAGAATATGAAATTGATGCTAAAGAACTCGATTTTACCAACAGTGTGGAGATAACTAAGGGAACCTTCAGGATAGTATCATGGCGTGGAACAGAGGTTGCTATAAAAACGCTTGAGGAGAATGTGTTTATTGATGAGGATAGAGTGAGAGCATTCAGAGATGAGCTTCATCTCCTACAGAAGATTCGGCATCCAAATGTCGTCCAGTTTCTGGGTGCTGTTACTCAAAGTAGTCCAATGATGATTGTTACGGAATATTTGCCCAAGGGCGATCTTTGTGCGTACTTGAAAAGAAAAGGAGCCTTAATGCCAATGACAGCTGTGAGATTTGCCCTTGATATTGCAAGGGGAATGAATTACTTGCATGAGAATAAGCCAGAACCAATCATTCACCGTGATCTTGAGCCTTCAAATATATTGCGGGATGACTCTGGACATCTGAAAGTTGCAGATTTTGGGTTAAGCAAGTTGCTGACAGTAAAAGAAGACAAACCTCTAACCTGTCAAGATGCTTCTTGCCGATATGTGGCTCCTGAGGTCTTCAAAAACGAAGAGTATGATACCAAAGCGGATGTATTCTCATTTGCTTTAATTCTTCAAGAGAATTGTTACTCAGATGATCGAAGGCTGTCCACCATTTACTGGTAA 1107 45.26 METKSVVRFKLGKQSSLAPERDRGEAAEKEAAAEEDEQQQDDVVEIDPRVRLMYLANEGDMEGIKELLDSGIDVNFRDIDDRTALHVAACQGFIDVVDFLLRRGAVVDTKDRWGSTPLADALHYRNHDVIKLLESHGAKPLMAPMHVKNARQVPEYEIDAKELDFTNSVEITKGTFRIVSWRGTEVAIKTLEENVFIDEDRVRAFRDELHLLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCAYLKRKGALMPMTAVRFALDIARGMNYLHENKPEPIIHRDLEPSNILRDDSGHLKVADFGLSKLLTVKEDKPLTCQDASCRYVAPEVFKNEEYDTKADVFSFALILQENCYSDDRRLSTIYW 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1509819 1514784 + Conep01aG0024500.1 Cone1ag0233 430924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0233 368 ProSiteProfiles Ankyrin repeat profile. 80 112 IPR002110 GO:0005515(InterPro)
Cone1ag0233 368 FunFam serine/threonine-protein kinase STY46-like 158 241 - -
Cone1ag0233 368 Gene3D - 14 151 IPR036770 -
Cone1ag0233 368 PIRSF ILK 2 359 - -
Cone1ag0233 368 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 62 354 IPR051681 GO:0004674(PANTHER)
Cone1ag0233 368 ProSiteProfiles Protein kinase domain profile. 165 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0233 368 Gene3D Transferase(Phosphotransferase) domain 1 152 362 - -
Cone1ag0233 368 SMART ANK_2a 80 109 IPR002110 GO:0005515(InterPro)
Cone1ag0233 368 SMART ANK_2a 113 142 IPR002110 GO:0005515(InterPro)
Cone1ag0233 368 SMART ANK_2a 47 76 IPR002110 GO:0005515(InterPro)
Cone1ag0233 368 SUPERFAMILY Protein kinase-like (PK-like) 164 356 IPR011009 -
Cone1ag0233 368 SUPERFAMILY Ankyrin repeat 51 142 IPR036770 -
Cone1ag0233 368 Pfam Protein tyrosine and serine/threonine kinase 170 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0233 368 FunFam Integrin-linked protein kinase family 29 156 - -
Cone1ag0233 368 MobiDBLite consensus disorder prediction 15 30 - -
Cone1ag0233 368 MobiDBLite consensus disorder prediction 1 42 - -
Cone1ag0233 368 ProSiteProfiles Ankyrin repeat region circular profile. 80 112 - -
Cone1ag0233 368 Pfam Ankyrin repeats (3 copies) 52 140 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0233 Cone-Chr1:1509819 Cone8ag0943 Cone-Chr8:9024987 6.30E-82 dispersed
Cone1ag0233 Cone-Chr1:1509819 Cone12ag1487 Cone-Chr12:10611532 1.12E-25 wgd
Cone1ag0233 Cone-Chr1:1509819 Cone15ag0728 Cone-Chr15:4150184 1.15E-36 wgd
Cone1ag0233 Cone-Chr1:1509819 Cone5ag1631 Cone-Chr5:11519173 1.92E-233 wgd
Cone1ag0233 Cone-Chr1:1509819 Cone8ag1535 Cone-Chr8:11531445 4.57E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82455 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0233 - - - 0.0