Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0235 ATGCTACTAGCACTCGGTGACCCATTTATGCAACATATTCCCGGCAGTCCTGGTACTCCCAGGACTAGATTGGAAAGGCTTCTAAGAGAAAGAGAGTTAAGAAAATCGAACCGTACTTCCCTTCTTAGTGAGGAGTCGAGAGATGGTGGTAACAAGCAATCTGAACTCTATGGAAATGACCCAATTTTCCAAGCTGAAAATTGGGGTCTACTTAGCGAAGAAGAGATCTTGGCAAGAGCTTTTGGGGATGCATGGGAAAGGGAAAATGAACGGCCCACTAAGCAACGGTTATTGGTCGTGGCCAATAGGTTGCCTGTTTCTGCTGTTAGAAAGGCCGAGGACTCATGGCAACTTGAAATTAGTGTTGGAGGGTTGGTCAGTGCACTTTTAGGTGTGAAGGAGTTTGATGCAAGATGGATTGGCTGGGCTGGTGTAAATGTACCTGACGAAGCTGGACAAAGAGCTCTAGAAAAAGCCTTAGCAGAAAAGAGGTGCATTCCGGTTTTTCTTGATGAGGAGATTGTTCATCAATATTACAATGGCTATTGCAGCAATATATTGTGGCCTCTTTTCCATTATCTTGGCCTTCCACAAGAAGATCGTCTTGCAACTACAAGAGGTTTTCAATCTCAATTTGATGCATATAAGAAGGCTAACCAGATGTTTGCTGATGTCGTGAACAAACATTATGAGGAAGGAGACGTTGTTTGGTGCCATGACTACCACCTAATGTTCTTACCAAAATGTTTGAAAGAGTATAACAATAATATGAAAGTTGGTTGGTTTCTCCACACACCTTTCCCTTCCTCGGAAATTCATCGGACTCTTCCATCTCGTTCAGAGCTCCTCAGATCCGTTCTTGCTGCTGATTTAGTCGGTTTTCACACGTATGATTATGCAAGGCACTTTGTGAGTGCTTGCACTCGCATTTTAGGCCTTGAGGGTACGCCGGAAGGAGTAGAGGACCAAGGGAAGCTCACTCGTGTAGCTGCTTTTCCTATTGGTATAGATTCTGATCGATTTATTCGAGCGCTTGAGCTTCCTCAAGTCCAAGAACACATGAAAGAATTGAAAGAACGCTTTGCTGGGAGAAAGGTAATGTTGGGCGTTGATCGTCTTGATATGATTAAGGGGATACCCCAAAAGATTTTGGCATTTGAAAAATTCCTTGAGGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCTGTGCCAACAAGGACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAGATTGTCGGACGAATTAATGGAAGGTTTGGAACTCTCACTGCTGTTCCGATACATCATCTGGATCGTTCTCTTGACTTTTATGCCTTATGTGCACTCTATGCTGTTACAGATGTAGCACTTGTTACATCGTTGAGGGATGGAATGAACCTCGTTAGCTATGAGTTTGTAGCATGCCAAGCTTCCAAGAAGGGGGTTCTCATCCTGAGTGAGTTTGCAGGGGCGGCACAGTCTCTTGGGGCCGGTGCTATTTTGGTTAACCCATGGAATATCACAGAGGTTGCTAATTCTATTGGTTATGCTTTGAATATGCGAGCCGATGAAAGAGAAAAACGACACCTCCACAATTTCATGCATGTAACAACTCACACTTCCCAAGAATGGGCTGCAACCTTTGTGAGTGAACTAAATGATACTGTAGTTGAAGCTCAACTAAGGACAAGACAAGTTCCGCCTGCACTTCCAATGACAGAAGCAGTTGATCGATATAAAAAATCCCACAATAGATTACTTATTCTGGGATTCAATGCTACCTTAACCGAACCAGTGGGTGCATTAGATAGAATGGGTCAACAAATTAGAGAAATGGAGCCTAAACTTCATCCGGAAATAAAAGAACCCTTGAAGAAGCTTTGCAATGACCATAAGACAACCATAGTTGTCCTAAGTGGAAGTGGTCGGAGTGTCATGGATGATAATTTCGGGGAATATAACATGTGGTTGGCAGCAGAAAATGGGATGTTTTTACGTCTTACTAAGGGAGAATGGATGACGACAATGCCGGAAAATTTACAAATGGATTGGGTTGATAGTGTGAAGCATGTGTTTGAATACTTTACTGAGAGAACGCCTCGATCCCATTTTGAGGTTCGTGAAACATCAGTTGTATGGAATTACAAGTATGCAGACATTGAATTCGGAAGGCTTCAAGCAAGAGATATGTTGCAGCATCTATGGACCGGCCCGATCTCAAATGCATCTGTTGATGTTATTCAAGGAAGTAGAGCAGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCAATCGATCGCATATTAGGCGAGATAGTTCACGACAAAGGCATGAAGACGCCCATAGACTATGTCCTTTGTATCGGTCACTTTCTGGCAAAGGACGAAGATGTCTACACATTTTTTGAGCCAGAGCTTCCTTTGGAAACATCGCCTGTACCGAGAGTTGTAACAACTAGTCCTGGAAGGTCCACCGCACCAAAGTTTTCTGCCACCAAATCGGGTTCGAAATCTTCTCGCCTCAAGAAACAACAGTCGATGTCAAGTTTAGAAAAGAAATCGGAATTGAACAATGGGACTGGGGTTGGTAGGAGGCCAATATCTCTAGAGAGAATGTCGATGAACGAAGGCTCTTCTGTTCTTGATCTAAAGGGTGACAATTACTTCTCTTGCTCGGTGGGACGGAAGAGATCGAGTGCCAGATACCTCCTTGGAACGTCTGATGATGTTGTCACTCTCTTGAAGGAGTTTTCTGGCTGTGTTTGTCTTGAAGTTGATTAA 2808 43.48 MLLALGDPFMQHIPGSPGTPRTRLERLLRERELRKSNRTSLLSEESRDGGNKQSELYGNDPIFQAENWGLLSEEEILARAFGDAWERENERPTKQRLLVVANRLPVSAVRKAEDSWQLEISVGGLVSALLGVKEFDARWIGWAGVNVPDEAGQRALEKALAEKRCIPVFLDEEIVHQYYNGYCSNILWPLFHYLGLPQEDRLATTRGFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNNNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALELPQVQEHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVANSIGYALNMRADEREKRHLHNFMHVTTHTSQEWAATFVSELNDTVVEAQLRTRQVPPALPMTEAVDRYKKSHNRLLILGFNATLTEPVGALDRMGQQIREMEPKLHPEIKEPLKKLCNDHKTTIVVLSGSGRSVMDDNFGEYNMWLAAENGMFLRLTKGEWMTTMPENLQMDWVDSVKHVFEYFTERTPRSHFEVRETSVVWNYKYADIEFGRLQARDMLQHLWTGPISNASVDVIQGSRAVEVRAVGVTKGAAIDRILGEIVHDKGMKTPIDYVLCIGHFLAKDEDVYTFFEPELPLETSPVPRVVTTSPGRSTAPKFSATKSGSKSSRLKKQQSMSSLEKKSELNNGTGVGRRPISLERMSMNEGSSVLDLKGDNYFSCSVGRKRSSARYLLGTSDDVVTLLKEFSGCVCLEVD 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1538897 1545625 + Conep01aG0024900.1 Cone1ag0235 430926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0235 935 MobiDBLite consensus disorder prediction 1 21 - -
Cone1ag0235 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 88 926 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cone1ag0235 935 MobiDBLite consensus disorder prediction 36 58 - -
Cone1ag0235 935 MobiDBLite consensus disorder prediction 821 878 - -
Cone1ag0235 935 Gene3D - 686 766 - -
Cone1ag0235 935 MobiDBLite consensus disorder prediction 822 865 - -
Cone1ag0235 935 Gene3D - 621 780 IPR023214 -
Cone1ag0235 935 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 96 561 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Cone1ag0235 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 343 545 - -
Cone1ag0235 935 SUPERFAMILY HAD-like 594 782 IPR036412 -
Cone1ag0235 935 Gene3D Glycogen Phosphorylase B; 87 342 - -
Cone1ag0235 935 CDD HAD_TPP 594 814 - -
Cone1ag0235 935 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 95 564 - -
Cone1ag0235 935 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 88 342 - -
Cone1ag0235 935 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 686 766 - -
Cone1ag0235 935 CDD GT20_TPS 96 561 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone1ag0235 935 FunFam Alpha,alpha-trehalose-phosphate synthase 620 692 - -
Cone1ag0235 935 Pfam Glycosyltransferase family 20 96 561 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cone1ag0235 935 Gene3D Glycogen Phosphorylase B; 343 545 - -
Cone1ag0235 935 Pfam Trehalose-phosphatase 619 831 IPR003337 GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0235 Cone-Chr1:1538897 Cone6ag0352 Cone-Chr6:1717486 9.13E-142 dispersed
Cone1ag0235 Cone-Chr1:1538897 Cone5ag1625 Cone-Chr5:11434317 0 wgd
Cone1ag0235 Cone-Chr1:1538897 Cone6ag0210 Cone-Chr6:992992 0 wgd
Cone1ag0235 Cone-Chr1:1538897 Cone9ag0238 Cone-Chr9:1015255 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0235 K16055 - vvi:100255459 1520.37