Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0248 ATGTCTGATAAGCATGATGAGAGAGGCTCTAACTATTACCACAACCTAAGGATCCAGATGCAGCTGCTAGATGATGATCATAATCAAAAGCCTTATGGAATTTCTGGGTCATCTAATTACTACAATCTTCAAGCTGGGTTTGATCCAAACCGTTCATTCACTGGGTATAGTATCAATAATAAGATTAACATTATTAATAATTGCTTTAATAGGGATGAAGCTGCTGCTGCTGCTGGTGCACCCATGGAATTTTTCTCTTCCTACTACAAATCATCACCATCAATACTATCAAGAGTACCAAGCTTTGCTGTTAATGGCTTGTCACCTTCTTCATCTGAAGTGATTTCCTCCATAGAATTAAGTCGTGATCAAAAGGTTGAGGATCATGACCAGGCTGATGTGAATTATGATGGATATAATTCATTGGCTAGGAATTCATCTGCAGTTTCTTCTAATTCTTCCTCTGGGGCTGGCGTTAATGCAGAAGAGAACTCTAGCAAGAGTACTACTACTAAGAAGAAGATCAATAGGCAGTCTTCAAAATTGGAGGATGAGGAATTAGAAGGAGAAGGAGAAGAAGAAGAAGAAAAAAAAGAAGAGGAAAGCTCTGAGAAAGTAGAACCCATGCAAGTGTTCAAAGGGAAGAAGAAAGGAGAGAAGAAGGAGAAAGAGCCAAGAGTTGCTTTCATGACCAAGAGTGAGGTTGATCATCTAGAAGATGGGTATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAATAGCCCTTATCCAAGAAGTTACTACAGGTGCACAACACAAAAATGCAAGGTGAAGAAACGAGTGGAGAGATCATATGAAGATCCATCTACGGTGATAACTACGTACGAACGTCAGCATAACCATCCACTACCATCAACGCTTAGAGGACATAGTAATCACAACATGGCGGCCGCGGCAGCTTCTTCTTCTATTTTCCAACCTTCAATGTTGCTGCCGCCACAAATGGCGGCTCCGCCTTATAGTTTTTCTCAGTTGTTGAGTACTACTCAAATGCCTCATCATCAGTATCTTAACCCTGGCTTCCGTATCGGCGGGTCCTCGGCTGCCGCCTCCGACGGTTATTCACAAATCCAGAACCATTCTCATCATCAATATAATGATATGTCTCACGAATATGGACTATTGCAAGACATTTTAAACCCCATGTTCCTTCAACAACACCCATGA 1209 41.36 MSDKHDERGSNYYHNLRIQMQLLDDDHNQKPYGISGSSNYYNLQAGFDPNRSFTGYSINNKINIINNCFNRDEAAAAAGAPMEFFSSYYKSSPSILSRVPSFAVNGLSPSSSEVISSIELSRDQKVEDHDQADVNYDGYNSLARNSSAVSSNSSSGAGVNAEENSSKSTTTKKKINRQSSKLEDEELEGEGEEEEEKKEEESSEKVEPMQVFKGKKKGEKKEKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCKVKKRVERSYEDPSTVITTYERQHNHPLPSTLRGHSNHNMAAAAASSSIFQPSMLLPPQMAAPPYSFSQLLSTTQMPHHQYLNPGFRIGGSSAAASDGYSQIQNHSHHQYNDMSHEYGLLQDILNPMFLQQHP 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1653400 1655520 + Conep01aG0026200.1 Cone1ag0248 430939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0248 402 MobiDBLite consensus disorder prediction 201 224 - -
Cone1ag0248 402 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 131 328 IPR044810 GO:0003700(InterPro)
Cone1ag0248 402 Coils Coil 175 204 - -
Cone1ag0248 402 SMART WRKY_cls 238 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0248 402 Pfam WRKY DNA -binding domain 239 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0248 402 MobiDBLite consensus disorder prediction 145 175 - -
Cone1ag0248 402 ProSiteProfiles WRKY domain profile. 233 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0248 402 FunFam WRKY transcription factor 57 224 298 - -
Cone1ag0248 402 Gene3D WRKY domain 222 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag0248 402 MobiDBLite consensus disorder prediction 145 224 - -
Cone1ag0248 402 MobiDBLite consensus disorder prediction 185 200 - -
Cone1ag0248 402 SUPERFAMILY WRKY DNA-binding domain 230 298 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1424 Cone-Chr10:11017299 Cone1ag0248 Cone-Chr1:1653400 1.82E-44 dispersed
Cone1ag0248 Cone-Chr1:1653400 Cone3ag1488 Cone-Chr3:33533095 1.41E-42 dispersed
Cone1ag0248 Cone-Chr1:1653400 Cone15ag0722 Cone-Chr15:4027841 9.60E-36 wgd
Cone1ag0248 Cone-Chr1:1653400 Cone5ag1608 Cone-Chr5:11290360 4.77E-188 wgd
Cone1ag0248 Cone-Chr1:1653400 Cone6ag0908 Cone-Chr6:4663736 8.97E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45410 PF00071 Ras 2.70E-61 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0248 - - - 0.0