Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0250 ATGGCAGCAGCTTCCTCAACAATAGCTCTGTCCTCCTCTGCTTTCTCCGGCGAGGCAGTGAAGCTCTCACCTTCCACTTCTGACCTTGTTGGCAGTGGAAGAATCAGCATGAGGAAGGCTGCCGCCAAGCAAGTCTCCTCCGGAAGCCCATGGTACGGCCCAGACCGAGTTAAGTATTTGGGCCCATTCTCCGGCGAGGCCCCATCCTACCTAACCGGAGAATTCCCCGGTGACTATGGCTGGGATACAGCTGGGCTTTCCGCTGACCCAGAAACCTTCGCAAAGAACCGTGAACTAGAAGTGATCCACTCCCGATGGGCCATGCTTGGGGCGCTTGGATGCGTCTTCCCAGAGCTTCTGGCTCGCAACGGAATCAAGTTCGGTGAAGCAGTCTGGTTCAAGGCGGGAGCCCAAATCTTCAGCGAAGGTGGGCTGGACTATTTCGGCAACCCAAGTTTGATCCACGCACAGAGTATCCTGGCAATCTGGGCCACACAGGTTATCTTGATGGGCGCCGTTGAGGGGTACCGTGTCGCAGGTGGGCCGCTCGGTGAGGTGATTGACCCATTATACCCAGGTGGAAGCTTCGACCCATTGGGCCTTGCTGACGATCCAGAGGCCTTTGCAGAGCTAAAAGTGAAGGAGATCAAGAATGGAAGATTAGCCATGGTCTCTATGTTTGGGTTCTTCGTACAAGCCATTGTGACCCGTAAGGGTCCTTTGGAAAACTTAGCCGACCACCTTGCTGACCCGGTTAGCAACAACGCTTGGGCTTATGCCACCAACTTTGTGCCCGGAAAATGA 804 54.98 MAAASSTIALSSSAFSGEAVKLSPSTSDLVGSGRISMRKAAAKQVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGIKFGEAVWFKAGAQIFSEGGLDYFGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMVSMFGFFVQAIVTRKGPLENLADHLADPVSNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1666782 1667956 - Conep01aG0026400.1 Cone1ag0250 430941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0250 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Cone1ag0250 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cone1ag0250 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Cone1ag0250 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cone1ag0250 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0250 Cone-Chr1:1666782 Cone9ag0914 Cone-Chr9:4485407 7.67E-178 dispersed
Cone11ag0729 Cone-Chr11:5047940 Cone1ag0250 Cone-Chr1:1666782 2.58E-14 transposed
Cone1ag0250 Cone-Chr1:1666782 Cone6ag0906 Cone-Chr6:4652083 5.44E-180 wgd
Cone1ag0250 Cone-Chr1:1666782 Cone9ag0912 Cone-Chr9:4480977 7.67E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0250 K08912 - rcu:8289767 493.426