Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0276 ATGGCTAGCAAGACCAAGATTTACATTGTTATGGAATTTGTGACTGGTGGGGAATTGTTTGACAAAATTTCAAGTAAAGGGAGATTGAAAGAAGATGATGCAAGGAAGTATTTCCAGCAGCTTATAAATGCTGTTGATTATTGTCATAGTAGAGGAGTTTTTCATAGAGATTTAAAGCCAGAGAATCTGCTGCTGGATGCTAGTAATGTTCTAAAAGTTTCAGATTTTGGATTGAGCGCACTACCTCAACAAGTTAGAGAGGATGGATTACTCCACACAACATGTGGAACACCAAATTATATTGCTCCAGAGGTGATAAAAAACAAAGGCTATGATGGAGCAAAGGCCGATTTGTGGTCTTGTGGCGTGATTCTCTTTGTCCTAATGGCTGGTTTTTTACCTTTCGAAGAGTCCAACCTCATGGCATTATATAAGAAGATATTCAAGGCTGACTTTACAAGTCCACCATGGTTCTCTACTGGTGCAAAGAAACTAGTCAAGAGAATCCTCGACCCTAATCCCTCAACTAGAATCTCTATTGCTGAGGTCATCAACAATGAATGGTTTAGAAAAGGATATAAGCAACCCACTTTTGAACAAGGTGCTTTTAGCCTTGATGACGTTGATTCTATCTTCAATGAATCAGGGGAGTCTAATAACCTTGTGGTGGAGAGGAGAGATGAAGGGCCCACAGTGCCTAGCACTATGAATGCTTTTGAGCTCATCTCTACATCCCAGGGCCTCAACCTCAGTATTCTTTTCGAGAAGCAAATGGGCCTTGTTAAACGTGAAACAAGATTCACATCTAATCGTCCTGTTAGTGAGATCATTTCCAAAATTGAAGAAGTTGCTGGGCCATTGGGTTTTGATGTGAAGAAGAATAACTTCAAGATGAAGCTTCAGGGGGAAAAAAGTGGTCGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTGGAAGTGGCCCCTTTACTCCACATGGTGGAGTTCCGTAAAGCCAAAGGAGATACCTTAGAATTTCACAAGTTCTATAACAACCTCTCAACTGGGTTGAAAGATATCGTATGGAAGTCTGAAGATGGAGACGGATTTGGAAATAGTGGAATTGATGACGCTGACGTGACAAGGATTTAG 1131 40.76 MASKTKIYIVMEFVTGGELFDKISSKGRLKEDDARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDASNVLKVSDFGLSALPQQVREDGLLHTTCGTPNYIAPEVIKNKGYDGAKADLWSCGVILFVLMAGFLPFEESNLMALYKKIFKADFTSPPWFSTGAKKLVKRILDPNPSTRISIAEVINNEWFRKGYKQPTFEQGAFSLDDVDSIFNESGESNNLVVERRDEGPTVPSTMNAFELISTSQGLNLSILFEKQMGLVKRETRFTSNRPVSEIISKIEEVAGPLGFDVKKNNFKMKLQGEKSGRKGHLSVATEILEVAPLLHMVEFRKAKGDTLEFHKFYNNLSTGLKDIVWKSEDGDGFGNSGIDDADVTRI 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1872727 1880840 + Conep01aG0029400.1 Cone1ag0276 430967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0276 376 FunFam Non-specific serine/threonine protein kinase 14 196 - -
Cone1ag0276 376 CDD CIPK_C 237 352 - -
Cone1ag0276 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0276 376 ProSiteProfiles NAF domain profile. 231 255 IPR018451 GO:0007165(InterPro)
Cone1ag0276 376 SMART serkin_6 1 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0276 376 SUPERFAMILY Protein kinase-like (PK-like) 4 199 IPR011009 -
Cone1ag0276 376 Pfam NAF domain 233 293 IPR004041 GO:0007165(InterPro)
Cone1ag0276 376 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 340 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone1ag0276 376 Gene3D Transferase(Phosphotransferase) domain 1 14 196 - -
Cone1ag0276 376 FunFam Non-specific serine/threonine protein kinase 230 356 - -
Cone1ag0276 376 ProSiteProfiles Protein kinase domain profile. 1 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0276 376 Pfam Protein kinase domain 2 189 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0276 376 Gene3D Kinase associated domain 1, KA1 231 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0276 Cone-Chr1:1872727 Cone6ag1118 Cone-Chr6:7140717 2.52E-224 dispersed
Cone1ag0276 Cone-Chr1:1872727 Cone15ag0687 Cone-Chr15:3700415 3.61E-110 wgd
Cone1ag0276 Cone-Chr1:1872727 Cone5ag1568 Cone-Chr5:10936351 1.70E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82456 PF00112 Peptidase_C1 1.10E-48 CL0125 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0276 - - - 0.0