Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0280 ATGAGGCTCTCATCAACTGGTTTTTGTCCTCAGACACAAGATGGGGAGAGAAGGGTGCTGAATTCAGAGCTCTGGCATGCTTGTGCTGGTCCTCTTGTTTCTCTACCAATTATTGGAAGCCGGGTCGTTTATTTTCCACAAGGGCATAGTGAACAGGTAGCTGTTTCAACTAACCGAGAAGTGGATGCACATATCCCAAACTACCCGAGCTTACCACCCCAACTCAACTGTCAACTCCATAATGTCACCATGCATGCAGATGTTGAGACTGATGAAGTGTATGCCCAGATGACATTGCAGCCTCTGACCTCAGAAGAACAGAAGGAAGCTTACCTTCCAGCTGAGTTGGGTGCTCCAAGCAAACAACCTACGAATTACTTTTGCAAGACGTTGACGGCTAGTGACACTAGTACTCATGGAGGATTTTCAGTTCCTCGTAGGGCAGCTGAGAAAGTGTTTCCTCCTCTGGATTTTTCCCAGCAGCCTCCCTGTCAGGAATTAATTGCTCGGGATCTGCATGACAATGAATGGAAATTTAGACATATATTTCGAGGGCAGCCCAAAAGGCACCTCCTTACTACGGGATGGAGCGTGTTTGTAAGTGCTAAACGCCTTGTTGCTGGTGATTCTGTACTCTTTATCTGGAATGAAAAGAATCAATTGCTATTAGGAATCCGGAGAGCTAATCGTCCTCAAACAGTGATGCCTTCTTCAGTTTTATCAAGTGATAGTATGCACTTAGGCCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGCCGTTTCACAATATTTTATAACCCAAGGGCTAGTCCTTCAGAATTTGTCATTCCCCTAGCCAAGTACGTCAAAGCAGTCTATCATACTCGGGTTTCTGTTGGGATGCGTTTTAGGATGCTGTTTGAAACTGAAGAATCAAGTGTTCGTCGTTACATGGGCACAATTACCGGCATTTGTGATTTGGATTCTACCAAGTGGCCAAATTCACATTGGCGATCGGTCAAGGTTGGTTGGGACGAATCAACTGCAGGAGAGAGACAGCCAAGAGTGTCCTTATGGGAAATCGAACCCTTGACGACTTTCCCGATGTATCCATCAGCATTCCCCATTAGACTTAAGCGACCATGGCCTGGTGCCCTCCCCTCTTTCCATGGCATGAAAGAGGACGATCTAGGAATGAATAGTCCAATGATGTGGCTAAGAGGGGATAATATTGACCGGGAAATCCAATCTCTGAACTTCCAGGGGATTGGAGTTTCACCATGGATGCAACAACCAAGGTTTGATGCTTCCATGTTCGGTCTGCAATCCGAGATGTACCAGGCCATGGCTGCCGCTGCGCATCAGGAAATGAGAACCGTTGACCCATCTGAACCACAAACCAATTCGGTTTTGCAATTCCAGCAAAACCCCCAAAGTCTTCTTAGCCGGTCTGCCTCTGCATTGATTCAGGCCTCTCCTCAAATGCTGCAACAATCTTCTCAGGCTCAGGTGCAGGCTCAGGTGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCGCAGGCTCAGGCGCAGGCGCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAAGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCGCAGGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTCATACTCAGGCACATGTTCAGGCACATGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCCGACTCAAACTCAGCCTCATGTTATTCAGCTGCAAATTCCACAACCACAACTGGCACATCAGCAGAAACAAACTGTGTCACATCAGCAGCAACAATCTTTGCCACATCAGCAGCAACAAGCGCTACCACATCAGCAATTAGTCGATAATCAGCAGATTACAAGCAGCATCTCCGCAATGCCTCAGAATGCATCACTGTGCCCACCACAACAGAGCTTTTCTGATTCAAACAATGTGACCAGCAGCCCAATGGTTTCACCATTGCATAACCTCCTTGGTTCCTATCATCAGGACGAATCAGCTCATCTACTCAACCTTCCTAGGAACAGCAGCAGCAACAACAACTCCTTTATCCAATCTTCTTCCTCTCCTGTTTGGCCTTCAAAACGAGTAGCAATTCATCCTCACTATGTTATTTCCCAGACAGAACATTTAGGAAGCCTTCCTCAGACTAGTAACATACCACATAGTCCTATTTCATTGCCACCCTTTCCAGGTAGTAGGGCGTGCTCGATTGACCAAGGGAGTACTGATTCCCAAAGCCATCTTTTATTTGGTGTTAATATCGAGCCCTCTTCCCTTCTCATGCAAAATGGGGTTTCAAGCCTTAGGGGTGGAGTTGGTAGTGAGAGCGACTCAACTGCTCTTCTCTTTTCTTCAAATTATATGAGTAGTAGTGGGACTGATTTCACAGAAAATCCAACAATCGAACCTTCTAGTTGTGTTGATGAGTCGGGTTTCTTGCAGTCGCAAGAAAATTTAGGGGGCCAAGTTAACTCACCAACCAGAACCTTTGTTAAGGTGTACAAGTTGGGGTCCTTTGGTAGGTCATTGGATATAACGAAATTCAGTAGCTACCATGAACTACGCAGTGAGCTTGCTCGTATGTTTTGTTTAGAAGGTGAGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTCGGGGATGATCCTTGGCCGGAGTTTGTAAACAGTGTGTGGTGTATAAAAATACTGTCACCACAAGAAGTGCAAGAAATGGGGAAACGGGGTTTGGAGCTTTTGAACTCGGTACCGATTCAGAAGCTCTCCTCGTCCAACAGCAGTGGATGTGAAAACTATCCGAGCCTTCAAGATTCGAGAAATATGAGCACTGGTATAACCTCCGTGGGGTCGCTAGAATATTGA 3075 49.43 MRLSSTGFCPQTQDGERRVLNSELWHACAGPLVSLPIIGSRVVYFPQGHSEQVAVSTNREVDAHIPNYPSLPPQLNCQLHNVTMHADVETDEVYAQMTLQPLTSEEQKEAYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSTKWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSAFPIRLKRPWPGALPSFHGMKEDDLGMNSPMMWLRGDNIDREIQSLNFQGIGVSPWMQQPRFDASMFGLQSEMYQAMAAAAHQEMRTVDPSEPQTNSVLQFQQNPQSLLSRSASALIQASPQMLQQSSQAQVQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAHTQAHVQAHAQAQAQAQAQAQAQAPTQTQPHVIQLQIPQPQLAHQQKQTVSHQQQQSLPHQQQQALPHQQLVDNQQITSSISAMPQNASLCPPQQSFSDSNNVTSSPMVSPLHNLLGSYHQDESAHLLNLPRNSSSNNNSFIQSSSSPVWPSKRVAIHPHYVISQTEHLGSLPQTSNIPHSPISLPPFPGSRACSIDQGSTDSQSHLLFGVNIEPSSLLMQNGVSSLRGGVGSESDSTALLFSSNYMSSSGTDFTENPTIEPSSCVDESGFLQSQENLGGQVNSPTRTFVKVYKLGSFGRSLDITKFSSYHELRSELARMFCLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQKLSSSNSSGCENYPSLQDSRNMSTGITSVGSLEY 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1913667 1919970 - Conep01aG0029800.1 Cone1ag0280 430971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0280 1024 MobiDBLite consensus disorder prediction 451 471 - -
Cone1ag0280 1024 MobiDBLite consensus disorder prediction 992 1011 - -
Cone1ag0280 1024 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone1ag0280 1024 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677(InterPro)
Cone1ag0280 1024 Gene3D - 291 363 - -
Cone1ag0280 1024 Gene3D - 884 977 - -
Cone1ag0280 1024 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Cone1ag0280 1024 ProSiteProfiles PB1 domain profile. 888 972 IPR053793 -
Cone1ag0280 1024 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Cone1ag0280 1024 FunFam Auxin response factor 883 977 - -
Cone1ag0280 1024 SUPERFAMILY CAD & PB1 domains 887 963 - -
Cone1ag0280 1024 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 979 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone1ag0280 1024 MobiDBLite consensus disorder prediction 455 471 - -
Cone1ag0280 1024 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cone1ag0280 1024 MobiDBLite consensus disorder prediction 641 670 - -
Cone1ag0280 1024 FunFam Auxin response factor 291 363 - -
Cone1ag0280 1024 Gene3D - 125 228 IPR015300 -
Cone1ag0280 1024 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Cone1ag0280 1024 FunFam Auxin response factor 125 229 - -
Cone1ag0280 1024 Pfam AUX/IAA family 883 977 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0280 Cone-Chr1:1913667 Cone9ag0298 Cone-Chr9:1285154 6.88E-294 dispersed
Cone1ag0280 Cone-Chr1:1913667 Cone5ag1564 Cone-Chr5:10893332 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45414 PF07818 HCNGP 1.10E-25 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0280 K14486 - rcu:8276588 870.537