Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0282 ATGGGCATATTAAACAAACTCCCATACATGTTTTGCAAAATACAGCTTGAAAGATTGGAAACTCTAAACCCATCTCTCTCATATATTAGATGTGTACATAGTGAATTATCGTTGGCTCCAAAGATACCCAAGAACAAAGTTGCAGTTTTCTGGGATTTGGACAATAAACTACCAAACTCATTCCCACCATACGAGGCTGCCCGTAAGCTAAATGTAGCAGCGGCTTCTTTCGGATCTGTACATTATATGGTAGCATATGCTAATCGTCATGCGTTTAGCTTTATTCCCCAAGCTGTTAGGGAGCAAAGGAAAGAGAGGAAGTTGTTGGATATATTGGAGAAGAAGCGTGTGATCAAACCGGCTGAACCGTATCTCTGTAGGGTTTGTGGAAGGAAGTTTCACACAAATGAAAAGCTAGTTAATCATTTCAAGGAACTCCATGAGCGTGAGCAGAAAAAAAGATTGAGCCAAATTGAATCTTCCAGAGGGAATAAGAAAGTGAAATTAGTGGCCAAGTATTCAATGAAAATGGAGAAGTATAAGAAGGCCACTAGAGATGTTTTGACTCCAAAAGTGGGATATGGTCTAGCTGATGAGCTGAAAAGGGCAGGGTTTTTGGTTAAGACTGTTTCTAACAAGCCACAAGCAGCAGATAATGCTTTGAAAGAGGATATGATAGATATCATGGACAAGGGAAGAGTTGAGTGCTTGATGCTTGTATCTGATGATTCCGGTTTTATTGATGTTTTGAAAGATGCGAAATTGAGAGGGCTTAAGACAGTTGTTGTAGGGGATATGAATGATGGGGTTTTGAAGAGGATTGGTGATGTTGGATTTTCTTGGAAGGAGATTTTAATGGGCAAGGCTAAGAAGGAGGCGGTATCGGCTGTAGGGAAGTGGAAGGATAGGGATGTTTTGAAGAGATTGGAATGGACTTATAAACCGGGAATGGAGAAGAAGTCTGATGATCTTGATTGTGAGGATGATTTTGATTTAAGTGAGGATGAGTTTGTGCAGAAGGGAAACGATGGTGTTTGGTGGGACCTTGACTCCGATGCGGCTTCTAGCACTTCATTACATGGTAGGTGA 1089 40.96 MGILNKLPYMFCKIQLERLETLNPSLSYIRCVHSELSLAPKIPKNKVAVFWDLDNKLPNSFPPYEAARKLNVAAASFGSVHYMVAYANRHAFSFIPQAVREQRKERKLLDILEKKRVIKPAEPYLCRVCGRKFHTNEKLVNHFKELHEREQKKRLSQIESSRGNKKVKLVAKYSMKMEKYKKATRDVLTPKVGYGLADELKRAGFLVKTVSNKPQAADNALKEDMIDIMDKGRVECLMLVSDDSGFIDVLKDAKLRGLKTVVVGDMNDGVLKRIGDVGFSWKEILMGKAKKEAVSAVGKWKDRDVLKRLEWTYKPGMEKKSDDLDCEDDFDLSEDEFVQKGNDGVWWDLDSDAASSTSLHGR 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1947603 1950106 + Conep01aG0030000.1 Cone1ag0282 430973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0282 362 Pfam NYN domain 196 264 IPR021139 GO:0004540(InterPro)
Cone1ag0282 362 CDD PIN_LabA-like 135 265 - -
Cone1ag0282 362 ProSitePatterns Zinc finger C2H2 type domain signature. 126 147 IPR013087 -
Cone1ag0282 362 Gene3D Classic Zinc Finger 100 186 - -
Cone1ag0282 362 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 23 356 - -
Cone1ag0282 362 SUPERFAMILY beta-beta-alpha zinc fingers 121 150 IPR036236 -
Cone1ag0282 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 152 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0282 Cone-Chr1:1947603 Cone4ag1591 Cone-Chr4:12140853 6.58E-15 dispersed
Cone1ag0282 Cone-Chr1:1947603 Cone7ag1359 Cone-Chr7:9868179 1.58E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45415 PF00069 Pkinase 2.40E-63 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0282 - - - 0.0